PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G03790.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MIKC_MADS
Protein Properties Length: 223aa    MW: 25824.3 Da    PI: 7.8187
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G03790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.26e-30959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krienk+ rqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+g+l+e+s+
  LPERR06G03790.1  9 KRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGRLFEFST 59
                     79***********************************************96 PP
2K-box90.82.5e-308717314100
            K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      + s +q++ kLk ++e Lq++qR+llGedL +Lsl+eL qLe+q+eksl +iRs Kn+ l++q+ el++ke++lq+ nk+L++k++e
  LPERR06G03790.1  87 ELSNYQDYLKLKTRVEFLQTTQRNLLGEDLVPLSLNELDQLENQIEKSLMNIRSSKNQQLFDQLFELRRKEQQLQDVNKDLKRKIQE 173
                      456789*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.221161IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-32277IPR002100Transcription factor, MADS-box
CDDcd002652.86E-43276No hitNo description
PRINTSPR004047.7E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-323859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.52887177IPR002487Transcription factor, K-box
PfamPF014861.4E-2490172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MGRGKVELKR IENKISRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS RGRLFEFSTT  60
SCMYKTLERY RNCNYNPCEA SAALETELSN YQDYLKLKTR VEFLQTTQRN LLGEDLVPLS  120
LNELDQLENQ IEKSLMNIRS SKNQQLFDQL FELRRKEQQL QDVNKDLKRK IQESSGENMP  180
HISCQDVGPS GHASEANQEF LHTAICDPSL HIGYRAYLDH LNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A4e-208317113101Developmental protein SEPALLATA 3
4ox0_B4e-208317113101Developmental protein SEPALLATA 3
4ox0_C4e-208317113101Developmental protein SEPALLATA 3
4ox0_D4e-208317113101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:16217607, ECO:0000269|PubMed:9085264, ECO:0000269|Ref.8}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G03790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0641840.0AK064184.1 Oryza sativa Japonica Group cDNA clone:002-104-B10, full insert sequence.
GenBankOSU788900.0U78890.1 Oryza sativa MADS box protein (OsMADS5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641896.11e-150MADS-box transcription factor 5
SwissprotA2Y9P01e-151MADS5_ORYSI; MADS-box transcription factor 5
SwissprotQ0DEB81e-151MADS5_ORYSJ; MADS-box transcription factor 5
TrEMBLA0A0D9WM811e-164A0A0D9WM81_9ORYZ; Uncharacterized protein
STRINGLPERR06G03790.11e-164(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22213264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.15e-75MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cui R, et al.
    Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa).
    Plant J., 2010. 61(5): p. 767-81
    [PMID:20003164]