PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G04390.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 405aa    MW: 44552.7 Da    PI: 4.8919
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G04390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.96.1e-10166210347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       WT +E+  ++ +v  +G g+Wk I++ +   +t+ q+ s+ qky
  LPERR06G04390.1 166 FWTHDEHMMFLMGVDVYGRGDWKNISKFFVPSKTPSQVSSHAQKY 210
                      5*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.583158215IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-9163214IPR009057Homeodomain-like
SMARTSM007171.1E-8163213IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-14164215IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-13166214IPR006447Myb domain, plants
CDDcd001673.82E-8167211No hitNo description
PfamPF002493.2E-7167210IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MDPMFSSMEW TAVEKGKARS VVSRLNNNFD VVSASNSNND DTRHDRIVRE LEALFPWMTK  60
NQVSNSYVDT VVDMMMAPTL PYDIGTVART NSEPMKVNFG MLSREDPMNS VDLSMNNYNN  120
MVFGDASIGD TVEQASPAPM VVNGSNEVNQ GNSYQPAAPN SGKSKFWTHD EHMMFLMGVD  180
VYGRGDWKNI SKFFVPSKTP SQVSSHAQKY FRRQKTTDKK QRYSINDVVL KDAKLKNPLD  240
NNNYGSWQAL AFAGGHLQPT SGYGTTGCVA PPANSTSSVT AMNNIAQFWA PLLYNSQTQQ  300
QFTQMQMQPQ QAWNDQQMMG TAALAPMEGA AAWNAAPMEG GAAWNNQQMM GAIAAPMEGA  360
ADNFAPAGRA ADNFAPVGGS GYYQQEQGTG YDVPAEPWMM NNNMF
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G04390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693466.16e-87PREDICTED: uncharacterized protein LOC107304324
TrEMBLA0A0D9WMF70.0A0A0D9WMF7_9ORYZ; Uncharacterized protein
STRINGLPERR06G04390.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01200.15e-21MYB family protein