PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G04790.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 313aa    MW: 33971.2 Da    PI: 6.5242
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G04790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.63.9e-10264311347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +W + E+e l ++v+q+G+g+Wk I  + +    gR + ++k++w++ 
  LPERR06G04790.1 264 KWCALEEETLRKGVEQYGNGNWKDILIHNPdvfIGRKAMDLKDKWRNM 311
                      68888****************************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.406257313IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-12257313IPR009057Homeodomain-like
SuperFamilySSF466892.96E-13259312IPR009057Homeodomain-like
CDDcd116607.20E-17263313No hitNo description
PfamPF002494.2E-8264311IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MPRLTAEDAS LILDHVVGDP SIPAAAANAF EAAVGNSFSQ AVLRGLWGDR AAAEERVREF  60
LAAEWAAIGP SRLEEAAERI VGDGAVETWS AADDVTRAKY CILAGEQRAR EIQGKLGGTI  120
PQGKQISTPE VHKVMDALKS SCANLHSVLE DPLPAAKAAA DEVLAARMDK AVDLNAGQVS  180
NQAATCSIAG PSAPTNDREA PRKGTSPSLM DWNPTARTYQ WEDSTDPEGS GSPIHRPHLP  240
SPRRTTISPL QPADDKAKRR KARKWCALEE ETLRKGVEQY GNGNWKDILI HNPDVFIGRK  300
AMDLKDKWRN MMR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G04790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4290170.0AY429017.1 Oryza sativa (japonica cultivar-group) ANTHER INDEHISCENCE1 (AID1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655850.10.0PREDICTED: uncharacterized protein LOC102721559, partial
TrEMBLA0A0D9WMK60.0A0A0D9WMK6_9ORYZ; Uncharacterized protein
STRINGLPERR06G04790.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31543040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.14e-13TRF-like 5