PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G04900.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ARR-B
Protein Properties Length: 694aa    MW: 76222 Da    PI: 6.3834
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G04900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like902.1e-28217270155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  LPERR06G04900.1 217 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRL 270
                      79*******************.********************************8 PP
2Response_reg76.41.1e-25281361109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl vdD+p+ +++l+++l++ +y +v+++ ++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge +++ + +  
  LPERR06G04900.1  28 VLAVDDDPVCLKVLETLLRRCQY-HVTSTNQAITALKLLRENRdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKTVMKGITH 119
                      799********************.***************99999********************87754.558********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+ +eel++
  LPERR06G04900.1 120 GACDYLLKPVRIEELRN 136
                      ***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363924.1E-2105694IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23005.9E-4125162No hitNo description
SuperFamilySSF521728.54E-3525153IPR011006CheY-like superfamily
SMARTSM004483.8E-3026138IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.27527142IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.1E-2328137IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.93E-2529141No hitNo description
PROSITE profilePS5129411.351214273IPR017930Myb domain
SuperFamilySSF466891.47E-19215274IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-30215275IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-25217270IPR006447Myb domain, plants
PfamPF002491.3E-6219269IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MLLSALRMEE RKRLMGRERD QFPVGMRVLA VDDDPVCLKV LETLLRRCQY HVTSTNQAIT  60
ALKLLRENRD MFDLVISDVH MPDMDGFKLL ELVGLEMDLP VIMLSVNGET KTVMKGITHG  120
ACDYLLKPVR IEELRNIWQH VVRRKFSNRE RNNLDFPKEC NKLPSVDTEH GPNQPTCGSS  180
DQNGRTSKKR KELHGEEDDE VDDSECQDND EPSAAKKPRV VWSVELHRKF VAAVNQLGID  240
KAVPKRILEL MNVEKLTREN VASHLQKYRL YLKRLSAVAS QQASIVAALG GRDPSFLHMG  300
AFEGLQSYQT FAPSAVLPSF NPHGLLSRTS GAAFGLQELA PSNTIQTATG NVTISHCLEE  360
NQQTNITQGL TVTLGQSQLQ QNWIHPENNG LSDVFSGSAL TNTLSGTLHR VPSSSLPPQE  420
LLECKQTNVS MPPSIRIPSA SSGLLERTLG VSTNLGDSSI SQQGALPIDG GFSADRLPLH  480
SSFDGPIATK LDTTLATSQR EIGQQGKFSV NMLVCPSDNL TLAKNAKTGA SSSGSTIMLP  540
LDTARHSDYL QFGGASNSVQ KIDGQKQDHI QNSNIIWSSM PSSELPTDNQ THITQNQRLD  600
SGSFNHNIGA HLADQTNASA SILPQMKFDT RTSEDKLKQK NTYDLGNSKL QGGFNSSSCN  660
FDGLLNSIIK VEKDDLPFLD NELGCDLFPL GACI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-24213276164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G04900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1029590.0AK102959.1 Oryza sativa Japonica Group cDNA clone:J033115H14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640894.10.0two-component response regulator ORR22
SwissprotQ5SML50.0ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBLA0A0D9WML90.0A0A0D9WML9_9ORYZ; Two-component response regulator
STRINGLPERR06G04900.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-112response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]