PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G05570.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 416aa    MW: 44744.3 Da    PI: 6.2468
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G05570.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.5e-12266311555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR++i +++ +L++l+P++      K +Ka++L + ++Y+k Lq
  LPERR06G05570.2 266 HSIAERLRREKISERMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 311
                      99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-17259321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.58E-13259315No hitNo description
PROSITE profilePS5088817.25261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-17263320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-9266311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-14267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MDNRVGSLAN VKVEEERTLR ASMDYSAGSY VWPHNSGSEN YGFGDGSSES YAQEGSLPPS  60
GYFVGSGSDR SLKTTENEKN PAMLANGCLP YNTQAHPLSA PTLCSAFQNI PSFMEPVNLE  120
AFGFQGSQNT AMLNKTSHPN GNPLLFDNAA MASLHDSKEF INGASISSFG TVLQALGAGG  180
LKAQQQKQNV RDIPLPTFTS GNHLAVTDAQ VPPLPSKILP LLHDHKSEYP INRSSDVEPQ  240
ANSAPGNSAS VKPRTRARRG QATDPHSIAE RLRREKISER MKNLQDLVPN SNKADKASML  300
DEIIDYVKFL QLQVKVLSMS RLGAPGAVLP LLRESQTECH SNPSLSASTI SQGLPDMPDS  360
EDSSAFEQEV VKLMETSITS AMQYLQNKGL CLMPIALASA ISNQKGMAVA AIPPEK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G05570.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8329070.0CT832907.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA242A24, full insert sequence.
GenBankCT8329080.0CT832908.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244I16, full insert sequence.
GenBankCT8329090.0CT832909.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI213M20, full insert sequence.
GenBankCT8329100.0CT832910.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI236P22, full insert sequence.
GenBankCT8329110.0CT832911.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI245F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644035.10.0transcription factor bHLH82 isoform X2
TrEMBLA0A0D9WMV20.0A0A0D9WMV2_9ORYZ; Uncharacterized protein
STRINGLPERR06G05570.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-57LJRHL1-like 3