PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G05570.5
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 484aa    MW: 51677.8 Da    PI: 5.7526
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G05570.5genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11334379555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR++i +++ +L++l+P++      K +Ka++L + ++Y+k Lq
  LPERR06G05570.5 334 HSIAERLRREKISERMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 379
                      99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-17327389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.09E-13327383No hitNo description
PROSITE profilePS5088817.25329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-17331388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-9334379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-14335384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MDNRRASMDY SAGSYVWPHN SGSENYGFGD GSSESYAQEG SLPPSGYFVG SGSDRSLKTT  60
ENEKNPAMLA NGCLPYNTQA HPLSGQILSK DGLHSNLLDL QQLQNNSNLQ GNSFPPGVLQ  120
CNSTSGTFDA KLDTPGLAEL PHALSSSIDS NGSDISAFLA DVHAVSSAPT LCSAFQNIPS  180
FMEPVNLEAF GFQGSQNTAM LNKTSHPNGN PLLFDNAAMA SLHDSKEFIN GASISSFGTV  240
LQALGAGGLK AQQQKQNVRD IPLPTFTSGN HLAVTDAQVP PLPSKILPLL HDHKSEYPIN  300
RSSDVEPQAN SAPGNSASVK PRTRARRGQA TDPHSIAERL RREKISERMK NLQDLVPNSN  360
KADKASMLDE IIDYVKFLQL QVKVLSMSRL GAPGAVLPLL RESQTECHSN PSLSASTISQ  420
GLPDMPDSED SSAFEQEVVK LMETSITSAM QYLQNKGLCL MPIALASAIS NQKGMAVAAI  480
PPEK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G05570.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8329070.0CT832907.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA242A24, full insert sequence.
GenBankCT8329080.0CT832908.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244I16, full insert sequence.
GenBankCT8329090.0CT832909.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI213M20, full insert sequence.
GenBankCT8329100.0CT832910.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI236P22, full insert sequence.
GenBankCT8329110.0CT832911.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI245F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644031.10.0transcription factor SPATULA isoform X1
RefseqXP_025882097.10.0transcription factor SPATULA isoform X1
TrEMBLA0A0D9WMV50.0A0A0D9WMV5_9ORYZ; Uncharacterized protein
STRINGLPERR06G05570.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.17e-57LJRHL1-like 3