PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR06G05590.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

Protein Properties

Length: 230aa MW: 26555 Da PI: 9.7856

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR06G05590.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.2	4.6e-16	132	222	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k +++s+v+ +l lp +f +++ + +++ t+ l de+ +++ + ++++ l++GW++F a++L +gD +vF+l++r++f +v LPERR06G05590.1 132 FIKPMLQSHVTGGFWLGLPTQFSRKYL-P-KRDETICLVDEEDDEFDTLY--LAHKRG--LSGGWRGFSIAHKLVDGDCLVFQLIQRTRF--KV 217 89**********************5.3.35669***********..677766..9**********************99999..99 PP EEE-S CS B3 95 kvfrk 99 ++r+ LPERR06G05590.1 218 YIIRA 222 99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	9.22E-24	125	223	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	9.5E-20	125	223	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.04E-25	130	221	No hit	No description
Pfam	PF02362	2.4E-14	132	222	IPR003340	B3 DNA binding domain
SMART	SM01019	6.0E-19	132	223	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.42	132	223	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MADAASYEEQ RRRQVEENKR KLDELRLHQL SAAVRESGPR PSPVKPRKRK ERAAAGAGED 60 VPLRRSGRVA SLPEKPKYQD EFHDFERKIR RSYGGKRRNL SGRVYATEKE REHAIATAED 120 LEKELGSDHP IFIKPMLQSH VTGGFWLGLP TQFSRKYLPK RDETICLVDE EDDEFDTLYL 180 AHKRGLSGGW RGFSIAHKLV DGDCLVFQLI QRTRFKVYII RASSLYESDN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR06G05590.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006656731.1	1e-141	PREDICTED: B3 domain-containing protein Os06g0194400
Swissprot	Q69V36	1e-142	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A0D9WMV9	1e-168	A0A0D9WMV9_9ORYZ; Uncharacterized protein
STRING	LPERR06G05590.1	1e-169	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	3e-58	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]