PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G05740.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 163aa    MW: 17697.6 Da    PI: 7.4123
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G05740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.95.8e-091453255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr +k +g              r+r++lg+++ +e+Aa+a +aa  +l+g
  LPERR06G05740.1 14 KYRGVRMRK-WGN-------------RRRIWLGSYDAPEKAARAFDAAFVCLRG 53
                     89***9998.666.............5*********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-131465IPR001471AP2/ERF domain
PROSITE profilePS5103214.4341463IPR001471AP2/ERF domain
SMARTSM003802.6E-171469IPR001471AP2/ERF domain
CDDcd000182.63E-181465No hitNo description
SuperFamilySSF541717.19E-121465IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MSSSSSAPAP ERNKYRGVRM RKWGNRRRIW LGSYDAPEKA ARAFDAAFVC LRGAEAKSGL  60
NFPDSPPVFA RTSDPQEVYE AAVSHANFRP PPSTAIAPPV ITGGNVAAPP PVQLPAGSGC  120
FDWSQNSNNP LYSPAARYGL PTMWKEDDDD HQGASDSLWS FND
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G05740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642230.12e-38ethylene-responsive transcription factor ERF039
RefseqXP_025882167.12e-38ethylene-responsive transcription factor ERF039-like
SwissprotQ84QC21e-21ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A0D9WMX81e-115A0A0D9WMX8_9ORYZ; Uncharacterized protein
STRINGLPERR06G05740.11e-116(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.15e-24ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]