PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G06370.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 230aa    MW: 23756.5 Da    PI: 4.3399
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G06370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.75.9e-183079255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  LPERR06G06370.1 30 QYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 79
                     6*****998.**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-282988IPR001471AP2/ERF domain
SMARTSM003805.7E-323094IPR001471AP2/ERF domain
PROSITE profilePS5103221.8253088IPR001471AP2/ERF domain
CDDcd000184.75E-163089No hitNo description
SuperFamilySSF541715.69E-183090IPR016177DNA-binding domain
PfamPF008474.9E-113079IPR001471AP2/ERF domain
PRINTSPR003675.4E-93142IPR001471AP2/ERF domain
PRINTSPR003675.4E-95369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MVKTTTAAAS NGAAAAATRG GGGGGGRGRQ YKGVRMRSWG SWVSEIRAPN QKTRIWLGSY  60
STAEAAARAY DAALLCLKGS AAADLNFPIR LPFDLPASSA MSPKSIQRFA AAAAANATGI  120
NGGEVVFSSV DDSVIGSEAS TTPASSSSNA ASPVSSPETV VSGGDDVDYR LLADIEAFFQ  180
SPKCMEYAMM DPCSAFFAPT APAAMAMAME EDCCWEEEGD IALWSFSSLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-142791266ATERF1
3gcc_A3e-142791266ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11826RGGGGGGGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G06370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046871e-106AP004687.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021C04.
GenBankAP0149621e-106AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126141e-106CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436681.11e-72ethylene-responsive transcription factor ERF014
RefseqXP_025881784.17e-73ethylene-responsive transcription factor ERF014
TrEMBLA0A0D9WN561e-164A0A0D9WN56_9ORYZ; Uncharacterized protein
STRINGLPERR06G06370.11e-165(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44830.16e-27ERF family protein