PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G06410.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 186aa    MW: 20102.7 Da    PI: 9.0844
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G06410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH247e-08104144954
                      HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       r RR+r+ +++  L++l+P  a      +l+ a++Le+A++Y++ L
  LPERR06G06410.1 104 ARLRRERVSQRMRALQRLVPGgA------RLDTASMLEEAIRYVRFL 144
                      699*****************966......9**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.5795144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.85E-998149No hitNo description
Gene3DG3DSA:4.10.280.104.6E-1199159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.23E-12100160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-11101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-5105144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MEFEFDMATM DTMSQEQLMH IISQLDSALA SSPSPSTSPS ASPPPAPPVP AQPISLQAPP  60
ALHPGGGMVY TTTLRQTAAE EEAAPRPRRR NAARVSSEPQ SVAARLRRER VSQRMRALQR  120
LVPGGARLDT ASMLEEAIRY VRFLKGHVQS LERAAAALHM HGARRGARAA GDDDDGVYSS  180
CPPYYA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104109RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G06410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046871e-96AP004687.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021C04.
GenBankAP0149621e-96AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882279.12e-50transcription factor HEC2
TrEMBLA0A0D9WN601e-129A0A0D9WN60_9ORYZ; Uncharacterized protein
STRINGLPERR06G06410.11e-130(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP161101111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.11e-20bHLH family protein