PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G07210.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 346aa    MW: 36625 Da    PI: 6.3967
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G07210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.4e-19168216355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+ aeeAa a+++a+ +l+g
  LPERR06G07210.1 168 YRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDAAEEAALAYDKAAFRLRG 216
                      9******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-31167225IPR001471AP2/ERF domain
SMARTSM003801.6E-35167230IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-21167224IPR016177DNA-binding domain
PROSITE profilePS5103223.037167224IPR001471AP2/ERF domain
CDDcd000183.04E-32168224No hitNo description
PRINTSPR003672.0E-10168179IPR001471AP2/ERF domain
PfamPF008471.0E-12168216IPR001471AP2/ERF domain
PRINTSPR003672.0E-10190206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MATIDLYNYQ LSSSSSSSSS DQELMKALEP FIRSASPTST PTFTPFSTST STPFSYSSPL  60
PNLPQDSYYF PSLPLPPPPP PTTTSFSELP PLPPTSSSFI SPSPAAAGLT HLAPDQIEQI  120
QAQFFMQQQQ QRAMASSSVA SYLAPRAQPM KASAAAAGSS AGGGGKMYRG VRQRHWGKWV  180
AEIRLPKNRT RLWLGTFDAA EEAALAYDKA AFRLRGDAAH LNFPSLRRGG AHLAGPLHAS  240
IDAKLTAICH SLATAGAAPP SKKAAAAAAA AHPDSPKGSA STTTTTSECD ESAISAAFSP  300
PPPPAPPLPE MANLDFTEAP WDESDVFNLY KCPSREIDID WDSILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-21165224363ATERF1
3gcc_A8e-21165224363ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G07210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644288.11e-105ethylene-responsive transcription factor RAP2-13
TrEMBLA0A0D9WNF00.0A0A0D9WNF0_9ORYZ; Uncharacterized protein
STRINGLPERR06G07210.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-34related to AP2 4