PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G07570.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Nin-like
Protein Properties Length: 896aa    MW: 101388 Da    PI: 8.5546
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G07570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK86.91.8e-27773823252
           RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      ek +++e +s+yF++pi++AA+eL+v+ T+LK++CR++GI+RWPhRk+ksl
  LPERR06G07570.1 773 EKALTFELVSQYFYMPITQAARELNVGHTLLKKKCRELGIPRWPHRKMKSL 823
                      799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484521.86E-535395IPR011990Tetratricopeptide-like helical domain
Gene3DG3DSA:1.25.40.101.1E-1038306IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513758.8355993IPR002885Pentatricopeptide repeat
PfamPF015350.0226187IPR002885Pentatricopeptide repeat
PfamPF128541.7E-8122151IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.433124158IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.5E-4126154IPR002885Pentatricopeptide repeat
PfamPF015354.8E-5158184IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.0E-5158183IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.336159185IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.013186221IPR002885Pentatricopeptide repeat
PfamPF015350.24189210IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.328222256IPR002885Pentatricopeptide repeat
PfamPF015359.1E-5225249IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.6E-5225249IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.586267301IPR002885Pentatricopeptide repeat
PfamPF015351.9E-7269298IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.1E-8269300IPR002885Pentatricopeptide repeat
PfamPF015354.6E-7300326IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.0E-4300325IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.445302328IPR002885Pentatricopeptide repeat
PfamPF130411.4E-7328360IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.115329363IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.7E-4331360IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.1E-10358390IPR011990Tetratricopeptide-like helical domain
PfamPF130412.2E-8361407IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.9E-5362395IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.805364394IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.218395425IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.859429459IPR002885Pentatricopeptide repeat
PfamPF015350.26434458IPR002885Pentatricopeptide repeat
PfamPF130411.2E-11460508IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.43461495IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.1E-6463496IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.487496526IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0015498530IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.004532562IPR002885Pentatricopeptide repeat
PfamPF015350.43536560IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.577598632IPR002885Pentatricopeptide repeat
PROSITE profilePS5151918.61759843IPR003035RWP-RK domain
PfamPF020423.3E-21776823IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016554Biological Processcytidine to uridine editing
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 896 aa     Download sequence    Send to blast
MRRWPPPVPA AARRRPTSAA VAPAADDLLL WHNRSLAALL RAGRYAAARR LFDALPARSV  60
VTWNSFLAGL ARRRDARAAR EFFDAMPVRD AVSWNTLLAA YSWSAHPDHL MAARRLFDEM  120
PQRNVVTWNT LLGAYARRGL MNEAQGLFDE MPQRSTASWN TMVTGFFAAG QVKKALEVFD  180
AMPVKDSASL STMVSGFTKN GLLNAAEELL TKRLRATDMD KAVDAYNTLI AAYGQAGRVS  240
DARRLFDMIP KGQYQRKMLK RKVFERNVVS WNSMMICYIK AGDVRSARAL FDEMQDKDLV  300
SWNTMISGYT QVSDMKEAEK LFWEMPDPDT VSWNLIIQGF MQKGEAERAR KFFNRMPERG  360
TISWNTMISG YEKNGDYISS VKLFLKMLEV GEIPDRHTFS SVLASCASLP MLHLGAQIHQ  420
LVEKSFVPDI AISNALITMY SRCGALTDAE AVFEQIGRKK DLVSWNALIG GYEHHGRATK  480
ALRLFKEMRR AKVMPTHITF VSLLSACVNA GLVSEGRMVF DTMVHEYGIV ARIEHYAALV  540
NLIGRHGQLE DALEVINSMP MAPDRSVWGA FLGACTAKKN EPLAQMAAKE LSRINPDSSA  600
PYVLIHNLHA HEGRWGNAAV VREEMERQGV YKQPGYSWID LEGKMHVFIS GDTWHPLAQE  660
IFSVLESFDR LAMAPQPSEL KDEPANSQEA LFSSLSFPSF HPQPVCSSIM QGNVLQDEFN  720
VIFEDDVLRY WDEMEQSEIK GEESEKALPL LCYGDQKGAA SKIIRGDDVR TEEKALTFEL  780
VSQYFYMPIT QAARELNVGH TLLKKKCREL GIPRWPHRKM KSLQTLINNV QVLQEASKAN  840
NEEELSMLVE MLQEERKLLE QKPYVQLEEK TKRLRQACFK ANYKKRRLLA LETGEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9f_A1e-561166302421pentatricopeptide repeat protein dPPR-U10
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G07570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0035090.0AP003509.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0525F01.
GenBankAP0035690.0AP003569.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0425F05.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882382.10.0pentatricopeptide repeat-containing protein At1g62260, mitochondrial isoform X1
TrEMBLA0A0D9WNK10.0A0A0D9WNK1_9ORYZ; Uncharacterized protein
STRINGLPERR06G07570.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108991212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.16e-41RWP-RK domain-containing protein