PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G08240.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family E2F/DP
Protein Properties Length: 379aa    MW: 41531.5 Da    PI: 8.431
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G08240.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP72.25.9e-2367132171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      rk+ksL+ll+++f++l+ + + +++ l+++ak+L    v  +rRRiYDi+NVLe+++++ +++kn+++w+g
  LPERR06G08240.2  67 RKQKSLGLLCTNFVALYDRGDVEAIGLDDAAKRL---GV--ERRRIYDIVNVLESVGILVRRAKNRYTWIG 132
                      79****************9999************...**..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-2563133IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.35E-1666131IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013729.7E-2867132IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.6E-2068132IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.3E-4210237IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MAATAIPSSS AAPAADAPVH AEVAQLPAPP PRPAPYQPPR LAVDGAGGGA VAVVGGGKPC  60
RHHAYSRKQK SLGLLCTNFV ALYDRGDVEA IGLDDAAKRL GVERRRIYDI VNVLESVGIL  120
VRRAKNRYTW IGFGGVPAAL RELKERALRE VPVVGSPSLD ETSAANVSDD EDDDKFDDAD  180
GDAESEKLSL SQSIDNSSDK PDAAPCKLRS DHRKEKSLGL LTQNFVKLFL TMETQQADSR  240
KPAFRWLGQP KKNEGDSVTV AFAPTKMTLP SKRAFGTDLT NFDNKRGKLD STMENRGNLT  300
LGNRSDFVYG PFHPAGTRAR KEHDNRKILE KDRKSIQDWE NLASSFRPQY QNPALNDLFG  360
HYVEAWSSWY SDLKRDAAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A3e-20662313170Transcription factor E2F8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G08240.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1200320.0AK120032.1 Oryza sativa Japonica Group cDNA clone:002-186-D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643420.11e-179E2F transcription factor-like E2FE
TrEMBLA0A0D9WNU20.0A0A0D9WNU2_9ORYZ; Uncharacterized protein
STRINGLPERR06G08240.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.26e-72DP-E2F-like 1