PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G09630.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Dof
Protein Properties Length: 260aa    MW: 26896 Da    PI: 6.749
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G09630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.82.4e-382986360
           zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                      ++++cprC+s+ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+
  LPERR06G09630.1 29 AEEVRCPRCESANTKFCYYNNYNLSQPRHFCKSCRRYWTKGGLLRNVPVGGGCRKPKR 86
                     57899**************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-253081IPR003851Zinc finger, Dof-type
PfamPF027011.1E-323186IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.9383286IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103470IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MQEFHSVPAG LAGRLFGGGV TAKDAAAQAE EVRCPRCESA NTKFCYYNNY NLSQPRHFCK  60
SCRRYWTKGG LLRNVPVGGG CRKPKRPAPS SSAADADAHR DAKNARSSPA AAAPASNASS  120
AGAATGQPSG GVAFAVGDGD ALSLPPPPAP MFADQAATFA SLFAPPPQPR MFPAFASFSA  180
PTKSEEEDIV AAAPVTPRVN TDISPPFAAA RSPAEAAEWA APPPPTVVLD AGMFDLAGGD  240
ASYWNTASWT DPDGTIYQLP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G09630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047916e-84AP004791.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0491D10.
GenBankAP0149626e-84AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159027.13e-76dof zinc finger protein DOF5.4-like
TrEMBLA0A0D9WPA50.0A0A0D9WPA5_9ORYZ; Uncharacterized protein
STRINGLPERR06G09630.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64963050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.11e-30DOF zinc finger protein 1