PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G10640.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 209aa    MW: 23724.6 Da    PI: 6.0072
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G10640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.000356486123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y C++C++ Fs++  L  H+  H
  LPERR06G10640.1 64 YMCKHCNEEFSTHQALGGHMAGH 86
                     89******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.45E-76191No hitNo description
Gene3DG3DSA:3.30.160.601.3E-46290IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.5966491IPR007087Zinc finger, C2H2
PfamPF139121.0E-76489IPR007087Zinc finger, C2H2
PROSITE patternPS0002806687IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MEQATVGAGA GELATGIMSG AEGSRLVLHD EREAQRKGKR KMKELRGAKS YEDGASRKEK  60
RRPYMCKHCN EEFSTHQALG GHMAGHHKEK RILKEKLLGR SLVLEEQPER SLNLKEKQPE  120
RGLILGEKQP ERIKVLKEKQ PERSLTLEEK QPEVYQDKID QIMNSQETTS NEGAAYLDGG  180
SNTEPNAEPE EDRRLPYDFD LNLEASEQE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G10640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642158.12e-63uncharacterized protein LOC107278701
TrEMBLA0A0D9WPM31e-149A0A0D9WPM3_9ORYZ; Uncharacterized protein
STRINGLPERR06G10640.11e-150(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139162028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.12e-06C2H2 family protein