PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G15010.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 68aa    MW: 7510.6 Da    PI: 12.229
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G15010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.21.1e-093866335
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgk 35
                     y+GVr +  +g+Wv+eIr+p++   + r++lg+
  LPERR06G15010.1 38 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGT 66
                     9****998.**********843...6******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-93766IPR016177DNA-binding domain
SMARTSM003807.7E-43768IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-153766IPR001471AP2/ERF domain
PROSITE profilePS5103213.7493768IPR001471AP2/ERF domain
PRINTSPR003676.2E-63849IPR001471AP2/ERF domain
PRINTSPR003676.2E-66068IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
MPDTELASTS PRPREAAARV VEKRGRGGGA GGSRKAAYRG VRMRAWGKWV SEIREPRKKS  60
RIWLGTSS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G15010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193635.11e-17ethylene-responsive transcription factor ERF039-like
SwissprotQ9LYD31e-15DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0D9WR522e-38A0A0D9WR52_9ORYZ; Uncharacterized protein
STRINGLPERR06G15010.13e-39(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP142992022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.11e-15ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]