PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G15260.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 403aa    MW: 43076.3 Da    PI: 6.5858
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G15260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM286.4e-0946101148
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......leleev.ikev.diykvePwdLp 48 
                      lp+G++F+Ptd+el+ e+L++kv+          ++++   i+   +i++++P++Lp
  LPERR06G15260.1  46 LPAGVKFDPTDQELI-EHLEAKVRPGGeaaahplIDEFIPtIEGEdGICYTHPEKLP 101
                      799************.99*****988856665543333333766646*********8 PP
2NAM26.61.7e-08102131101128
              NAM 101 glkktLvfy..kgrapkgektdWvmheyrl 128
                      g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  LPERR06G15260.1 102 GCKKILVLYtnFGKHRKPEKTNWVMHQYHL 131
                      89*******5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.55E-2140150IPR003441NAC domain
PfamPF023654.7E-947131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MDGTEASGGY HLIGSRIEEH RKYMSESGCC PRCGHKIDRK LDWVGLPAGV KFDPTDQELI  60
EHLEAKVRPG GEAAAHPLID EFIPTIEGED GICYTHPEKL PGCKKILVLY TNFGKHRKPE  120
KTNWVMHQYH LGVAEEERDG ELVVSKIFYQ TQPRQCAAAP GAGESSAAAA APAAAGGGGV  180
DHRIGRRTTA TTERDRAVAA AAAAAAAAAA PMGSSSNVSA AAVGYHGGAG GIDEFSFAQF  240
RSSFEEAGMG SSSSDHQSGR AADDEGVLHP GHHQHHHQHQ HHDGGGGHHY VGQQQCVAAT  300
FHVVSSPANP ISTLISPPAA HQGTVMLRQP DHQPPSYYHH QEDERPHQPR KFDGRSTSGS  360
GLEEVIMGCT SRRSKGGETS GGKDGTEWQY PSFWPSDSQD HHG
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G15260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037133e-74AP003713.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0528E12.
GenBankAP0149623e-74AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126143e-74CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641895.11e-133NAC domain-containing protein 75 isoform X2
TrEMBLA0A0D9WR860.0A0A0D9WR86_9ORYZ; Uncharacterized protein
STRINGLPERR06G15260.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.12e-35NAC domain containing protein 75