PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G17370.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 368aa    MW: 39398.5 Da    PI: 6.3527
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G17370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS265.91.4e-816736585374
             GRAS  85 sevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesgskeeleetgerLakfAeel 172
                        + P+l+f+hltaNqaIle+++ + +rvHi+D+d+ +G+QWp+Llqa+a+R+      +pp++RiTg g+    ++++l +tg+rL+ fA+++
  LPERR06G17370.1  67 EIIAPFLRFAHLTANQAILESIDAAaRRVHIVDLDAVHGVQWPPLLQAIADRAaadpsLSPPEVRITGAGA----DRDTLLRTGNRLRAFARSI 156
                      4578*******************9989**************************654444499*********....9****************** PP

             GRAS 173 gvpfefnvl...vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...........s 252
                      ++pf+f++l    +++ ++ ++ +L+++p+E+laVn+v+ lh+l      +++   ++Lk vkslsP+v++++e e++ ++            +
  LPERR06G17370.1 157 HLPFHFTPLllsSSSSGAASSTTQLELHPDETLAVNCVMFLHNLG----GINE-LAAFLKWVKSLSPTVLTIAETESSVDRVsgggvdpvnsdE 245
                      ********9654444677789***********************7....4554.789*******************66544445566666666* PP

             GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk. 345
                      + +++  a+e+y a+f++lea++++ s+er+ vE+e+lgrei+ +v  +       +   e+W ++ ++aGF + pls +a++qa+lllr ++ 
  LPERR06G17370.1 246 LRRKVRTAMEHYEAVFEALEATVAPGSRERMEVEEEVLGREIEAAVGSRWWL---ARGGIERWGAAARAAGFDARPLSAFAVSQARLLLRLHYp 336
                      **********************************************999887...667799********************************* PP

             GRAS 346 sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      s+gy v+e++g+ +lgW++rpL+svSaW+
  LPERR06G17370.1 337 SEGYLVQESRGACFLGWQTRPLLSVSAWQ 365
                      ****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.7121344IPR005202Transcription factor GRAS
PfamPF035144.8E-7967365IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MLRSLHSSSS SDTDNNNSGS GVCKNNGAGG EVSAAAVAAA PSARDLLLAC ADFLQRGDLP  60
AARRLAEIIA PFLRFAHLTA NQAILESIDA AARRVHIVDL DAVHGVQWPP LLQAIADRAA  120
ADPSLSPPEV RITGAGADRD TLLRTGNRLR AFARSIHLPF HFTPLLLSSS SSGAASSTTQ  180
LELHPDETLA VNCVMFLHNL GGINELAAFL KWVKSLSPTV LTIAETESSV DRVSGGGVDP  240
VNSDELRRKV RTAMEHYEAV FEALEATVAP GSRERMEVEE EVLGREIEAA VGSRWWLARG  300
GIERWGAAAR AAGFDARPLS AFAVSQARLL LRLHYPSEGY LVQESRGACF LGWQTRPLLS  360
VSAWQPSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-447136588375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G17370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0326331e-92FJ032633.1 Oryza alta clone a0036L17 charged multivesicular body protein 4b, putative SFT2 protein, fructose-bisphosphate aldolase cytoplasmic isozyme, copine-1, subtilisin-like protease precursor, ZAC, MYB-CC type transfactor, calcium ion binding protein, Monoculm1, Mlo family protein, aspartic proteinase nepenthesin-1 precursor, microtubule-associated protein MAP65-1a, and IQ calmodulin-binding motif family protein genes, complete cds; and unknown genes.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179440.11e-152protein MONOCULM 1-like
SwissprotQ84MM91e-143MOC_ORYSJ; Protein MONOCULM 1
TrEMBLA0A0D9WS200.0A0A0D9WS20_9ORYZ; Uncharacterized protein
STRINGLPERR06G17370.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.18e-49GRAS family protein
Publications ? help Back to Top
  1. Li X, et al.
    Control of tillering in rice.
    Nature, 2003. 422(6932): p. 618-21
    [PMID:12687001]
  2. Sun F, et al.
    Identification and functional analysis of the MOC1 interacting protein 1.
    J Genet Genomics, 2010. 37(1): p. 69-77
    [PMID:20171579]
  3. Sanyal A, et al.
    Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
    Mol. Biol. Evol., 2010. 27(11): p. 2487-506
    [PMID:20522726]
  4. Yan WH, et al.
    A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
    Mol Plant, 2011. 4(2): p. 319-30
    [PMID:21148627]
  5. Xu C, et al.
    Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
    Nat Commun, 2012. 3: p. 750
    [PMID:22434193]
  6. Lin Q, et al.
    Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
    Nat Commun, 2012. 3: p. 752
    [PMID:22434195]
  7. Liang WH,Shang F,Lin QT,Lou C,Zhang J
    Tillering and panicle branching genes in rice.
    Gene, 2014. 537(1): p. 1-5
    [PMID:24345551]
  8. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]