PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G18280.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 211aa    MW: 23698.2 Da    PI: 5.5433
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G18280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.13.9e-07124169554
              AP2   5 GVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkle 54 
                      GVr +   +++v+eI+        + r++lg+++ ae+ a  ++ a++ l+
  LPERR06G18280.1 124 GVRKRF-GNKYVVEIHN----SiLKERVWLGTYDKAEMGAWVYDTAARVLR 169
                      9**999.8******988....4455*******************9999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.328121178IPR001471AP2/ERF domain
SMARTSM003805.4E-13121184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-18121179IPR001471AP2/ERF domain
CDDcd000184.05E-14122178No hitNo description
SuperFamilySSF541712.68E-12122178IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MEMEMKKLKK TFVVYCQKSA ELAVEAWGNS PPPVEEELLL VEDETRELMI VPMVQGEGTV  60
VDSEVGEILF IPFIEGDVIV EPAVQRKMRP APLLAKKRPR RSDAKKTPVA EGDEEEGEEM  120
TYCGVRKRFG NKYVVEIHNS ILKERVWLGT YDKAEMGAWV YDTAARVLRR SMAETNFPSP  180
RAGARADGGY ARDARILRRS SPQAPPTRGD G
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G18280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9WSD81e-152A0A0D9WSD8_9ORYZ; Uncharacterized protein
STRINGLPERR06G18280.11e-153(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1378799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-14erf domain protein 9