PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G18300.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 288aa    MW: 31686.5 Da    PI: 4.4403
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G18300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.85.6e-132477255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     +y G r+++ +g++ AeIr p  +++  +r++lg+f taeeAa a++aa++ ++g
  LPERR06G18300.1 24 KYWGARRRP-WGKYSAEIRNPLVGNREyQRVWLGTFKTAEEAAWAYDAAARVIHG 77
                     788999999.**********87766236**********************98886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-232487IPR001471AP2/ERF domain
SMARTSM003805.5E-222492IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-172488IPR016177DNA-binding domain
PfamPF008474.0E-72474IPR001471AP2/ERF domain
PROSITE profilePS5103221.2192486IPR001471AP2/ERF domain
PRINTSPR003672.5E-82536IPR001471AP2/ERF domain
PRINTSPR003672.5E-85167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MTMSSLAEQL KAYSQAAAAQ AKKKYWGARR RPWGKYSAEI RNPLVGNREY QRVWLGTFKT  60
AEEAAWAYDA AARVIHGDDH AKTNFPASSP TPKPDQIQDP NLRSMLLYFD LARFLRSNRH  120
TAGATTPVLP PPPPPAPAIA VPPPATVESE ISPVVEEVIA APAPAPEQVS EPETEKEKEK  180
EKGEVAGSEV APVIDDLFLE APIMSPEWGD IDLDYSSLLD DVPVYFQPSM FDDEPFEQQR  240
KKPKLVGDYT PTDSYEKMMI DIIGGFDDYM ASSSSSQHPA PGDGQAPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1324861472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G18300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9WSE00.0A0A0D9WSE0_9ORYZ; Uncharacterized protein
STRINGLPERR06G18300.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11190.12e-10ERF family protein