PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G18880.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TALE
Protein Properties Length: 208aa    MW: 23251.9 Da    PI: 5.4428
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G18880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.16.3e-081211542154
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      k +yp++e++++L +++gL+ +q+ +WF N+R +
  LPERR06G18880.1 121 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 154
                      569*****************************87 PP
2ELK30.11.1e-107596122
              ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                     ELKh+L+++Y+++L+++++E++
  LPERR06G18880.1 75 ELKHELKQGYREKLVDIREEIL 96
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5121310.1967595IPR005539ELK domain
SMARTSM011880.00147596IPR005539ELK domain
PfamPF037891.7E-67596IPR005539ELK domain
PROSITE profilePS5007111.59695158IPR001356Homeobox domain
SuperFamilySSF466895.56E-1697162IPR009057Homeodomain-like
SMARTSM003893.3E-1097162IPR001356Homeobox domain
CDDcd000863.50E-1298159No hitNo description
Gene3DG3DSA:1.10.10.601.1E-24102159IPR009057Homeodomain-like
PfamPF059201.8E-18115154IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MEAVMACWEL EQTLQSLTGA SPGEGSGATM SDDEDNQVDS ENNMFDGNDG SDGMGFGPLM  60
LTEGERSLVE RVRQELKHEL KQGYREKLVD IREEILRKRR AGKLPGDTAS TLKAWWQAHS  120
KWPYPTEEDK ARLVQETGLQ LKQINNWFIN QRKRNWHSNP ASSSSDKSKR KRKPKPSTPE  180
DLFGGTATLS VECRVGCTAP VAVTEGDL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151172RKRNWHSNPASSSSDKSKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G18880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076280.0AB007628.2 Oryza sativa Japonica Group HOS59 mRNA, complete cds.
GenBankAB0618180.0AB061818.1 Oryza sativa Japonica Group HOS59 mRNA for KNOX family class 2 homeodomain protein, complete cds.
GenBankAK2891770.0AK289177.1 Oryza sativa Japonica Group cDNA, clone: J100024E07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656303.11e-124PREDICTED: homeobox protein knotted-1-like 11 isoform X3
RefseqXP_015693734.11e-124PREDICTED: homeobox protein knotted-1-like 11 isoform X1
SwissprotQ94LW41e-123KNOSB_ORYSJ; Homeobox protein knotted-1-like 11
TrEMBLA0A0D9WSL51e-153A0A0D9WSL5_9ORYZ; Uncharacterized protein
STRINGLPERR06G18880.11e-153(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-100KNOTTED1-like homeobox gene 3