PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G18880.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TALE
Protein Properties Length: 204aa    MW: 22821.4 Da    PI: 5.8149
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G18880.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.16.1e-081171502154
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      k +yp++e++++L +++gL+ +q+ +WF N+R +
  LPERR06G18880.2 117 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 150
                      569*****************************87 PP
2ELK30.11.1e-107192122
              ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                     ELKh+L+++Y+++L+++++E++
  LPERR06G18880.2 71 ELKHELKQGYREKLVDIREEIL 92
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037891.6E-67192IPR005539ELK domain
SMARTSM011880.00147192IPR005539ELK domain
PROSITE profilePS5121310.1967191IPR005539ELK domain
PROSITE profilePS5007111.59691154IPR001356Homeobox domain
SuperFamilySSF466895.13E-1693158IPR009057Homeodomain-like
SMARTSM003893.3E-1093158IPR001356Homeobox domain
CDDcd000864.07E-1294155No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2498155IPR009057Homeodomain-like
PfamPF059201.7E-18111150IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MACWELEQTL QSLTGASPGE GSGATMSDDE DNQVDSENNM FDGNDGSDGM GFGPLMLTEG  60
ERSLVERVRQ ELKHELKQGY REKLVDIREE ILRKRRAGKL PGDTASTLKA WWQAHSKWPY  120
PTEEDKARLV QETGLQLKQI NNWFINQRKR NWHSNPASSS SDKSKRKRKP KPSTPEDLFG  180
GTATLSVECR VGCTAPVAVT EGDL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147168RKRNWHSNPASSSSDKSKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G18880.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076280.0AB007628.2 Oryza sativa Japonica Group HOS59 mRNA, complete cds.
GenBankAB0618180.0AB061818.1 Oryza sativa Japonica Group HOS59 mRNA for KNOX family class 2 homeodomain protein, complete cds.
GenBankAK2891770.0AK289177.1 Oryza sativa Japonica Group cDNA, clone: J100024E07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656303.11e-121PREDICTED: homeobox protein knotted-1-like 11 isoform X3
RefseqXP_015693734.11e-121PREDICTED: homeobox protein knotted-1-like 11 isoform X1
SwissprotQ94LW41e-120KNOSB_ORYSJ; Homeobox protein knotted-1-like 11
TrEMBLA0A0D9WSL51e-150A0A0D9WSL5_9ORYZ; Uncharacterized protein
STRINGLPERR06G18880.11e-150(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.27e-97KNOTTED1-like homeobox gene 3