PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G18970.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 370aa    MW: 39991.9 Da    PI: 8.7769
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G18970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.86.2e-30230289159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dgy+WrKYGqK+ k++++pr+Y+rC++a  Cpvkkkv+rsa+d+++++ tYegeHnh 
  LPERR06G18970.1 230 VKDGYQWRKYGQKVTKDNPCPRAYFRCSFApACPVKKKVQRSADDNTLLVATYEGEHNHA 289
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.58.706.6E-572129No hitNo description
PROSITE profilePS5081126.142225291IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.0E-29228291IPR003657WRKY domain
SuperFamilySSF1182901.23E-25229291IPR003657WRKY domain
SMARTSM007742.6E-35230290IPR003657WRKY domain
PfamPF031066.4E-25231288IPR003657WRKY domain
Gene3DG3DSA:1.20.58.706.6E-5292335No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MRIAILSPFS PPALSIDQLC GEELVLAAAA MDSWISQPSL SLDLNVGLPS TARKAPAAAP  60
IKVLVEENFL SVKKDHEVEA LEAELRRASE ENKKLSEMLH AVVTKYTELQ SQVNDMMTAT  120
AANNNAGGEQ RHSSSTSDGG SVSPSRNKRV RSADDSIDDA SHHHHRRASP PFVTVGAAGP  180
APAAYVSAAA DQMECTSAAA FAKRIVREDC KPKVSKRYVH ADPSDLSLVV KDGYQWRKYG  240
QKVTKDNPCP RAYFRCSFAP ACPVKKKVQR SADDNTLLVA TYEGEHNHAQ PPHHDAKNSN  300
SSSSTKQPQT QTPPQQQQQQ RQAAAVATEV AARKNLAEQM AVTLTRDPGF KAALVTALSG  360
RILDLSPSRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-222292921375WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:23462973). Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (PubMed:21961049). Regulates negatively the basal defense responses to the compatible fungus M.oryzae (PubMed:23462973, PubMed:21726398). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:21726398, ECO:0000269|PubMed:21961049, ECO:0000269|PubMed:23462973}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G18970.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (PubMed:23462973). Accumulates in response to M.oryzae (PubMed:21726398). {ECO:0000269|PubMed:21726398, ECO:0000269|PubMed:23462973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1062821e-111AK106282.1 Oryza sativa Japonica Group cDNA clone:002-101-A04, full insert sequence.
GenBankAK1196441e-111AK119644.1 Oryza sativa Japonica Group cDNA clone:002-130-G04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641578.11e-166WRKY transcription factor WRKY28-like
SwissprotQ0DAJ31e-168WRK28_ORYSJ; WRKY transcription factor WRKY28
TrEMBLA0A0D9WSM70.0A0A0D9WSM7_9ORYZ; Uncharacterized protein
STRINGLPERR06G18970.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP182238103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.24e-46WRKY DNA-binding protein 18
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang Y,Wang L
    The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants.
    BMC Evol. Biol., 2005. 5: p. 1
    [PMID:15629062]
  3. Wu KL,Guo ZJ,Wang HH,Li J
    The WRKY family of transcription factors in rice and Arabidopsis and their origins.
    DNA Res., 2005. 12(1): p. 9-26
    [PMID:16106749]
  4. Berri S, et al.
    Characterization of WRKY co-regulatory networks in rice and Arabidopsis.
    BMC Plant Biol., 2009. 9: p. 120
    [PMID:19772648]
  5. Delteil A, et al.
    Building a mutant resource for the study of disease resistance in rice reveals the pivotal role of several genes involved in defence.
    Mol. Plant Pathol., 2012. 13(1): p. 72-82
    [PMID:21726398]
  6. Peng Y,Bartley LE,Canlas P,Ronald PC
    OsWRKY IIa Transcription Factors Modulate Rice Innate Immunity.
    Rice (N Y), 2010. 3(1): p. 36-42
    [PMID:21961049]
  7. Chujo T, et al.
    OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus.
    Plant Mol. Biol., 2013. 82(1-2): p. 23-37
    [PMID:23462973]
  8. Yazawa T,Kawahigashi H,Matsumoto T,Mizuno H
    Simultaneous transcriptome analysis of Sorghum and Bipolaris sorghicola by using RNA-seq in combination with de novo transcriptome assembly.
    PLoS ONE, 2013. 8(4): p. e62460
    [PMID:23638091]