PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G20540.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ARF
Protein Properties Length: 942aa    MW: 104940 Da    PI: 7.7717
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G20540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.62.7e-24166267199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  LPERR06G20540.1 166 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 255
                      99*****************************86555544..8************************************************..77 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  LPERR06G20540.1 256 DNNQLLLGIRRA 267
                      77778**99997 PP
2Auxin_resp88.61.2e-293003671783
       Auxin_resp  17 PrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       ras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdld  rWpnS+Wrs+k
  LPERR06G20540.1 300 SRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDAARWPNSHWRSVK 367
                      599****************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-48151295IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.0E-43158281IPR015300DNA-binding pseudobarrel domain
CDDcd100171.91E-22165266No hitNo description
SMARTSM010191.8E-25166268IPR003340B3 DNA binding domain
PROSITE profilePS5086313.239166268IPR003340B3 DNA binding domain
PfamPF023628.7E-23166267IPR003340B3 DNA binding domain
PfamPF065074.1E-25299367IPR010525Auxin response factor
SuperFamilySSF542772.29E-7808887No hitNo description
PfamPF023092.6E-8808896IPR033389AUX/IAA domain
PROSITE profilePS5174523.1811895IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 942 aa     Download sequence    Send to blast
MKKKPITLVA RVIAKQQRKK QKQKQKRKRE RKMRLSSSSG SVLPTQASSP EAVEEQKCLN  60
SELWHACAGP LVSLPAVGSR VVYFPQGHSE QVAASTNKEM ESQIPNYPNL PPQLICQLHN  120
VTMHADAETD EVYAQMTLQP LSPQELKDPY LPAELGTANK QPTNYFCKTL TASDTSTHGG  180
FSVPRRAAEK VFPPLDFTQQ PPAQELIAKD LHGNEWKFRH IFRGQPKRHL LTTGWSVFVS  240
AKRLVAGDSV LFIWNDNNQL LLGIRRANRP QTVMPSSVLS SDSMHIGLLA AAAHAASTNS  300
RASPSEFVIP LAKYVKAVYH TRISVGMRFR MLFETEESSV RRYMGTITGI SDLDAARWPN  360
SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSPF PLRLKRPWPT GLPSLHGGKE  420
DDLTSSLMWL RESANPGFQS LNFGGLGMSP WMQPRLDTSL LGLQPDMYQT MAAAAFQDPT  480
KQVSPTMLQF QQPQNIGGRA NPLLASQILQ QVQPQFQQHQ YLQNINETTI QGQTQTEFLQ  540
QQLQRCQSFT EQKPQLQTQQ QQQESQQQQQ QQSQCMQVQQ HQQMQQQKNM TNYQSVSNAL  600
SPFSQLSSAS QSSPMTLQTI LPFSQPQSFP DTNMSSLSPS NTSTIHNNTL RPFSSEAPSH  660
LSMPRPTAIP VADPWSSKRV AVESLLPSRP QVTSQIEQLD STPPGIPQSS ALAPLPGRGC  720
LVDQDGNSDP QNHLLFGVNI DSQSLLMQGG IPNLQGENDS TAIPYSTSNF LSPSQNDFPL  780
DQTLNSADCL DESGYVPCSQ NSDQVINRPP ATFVKVYKSG TYGRSLDITR FSSYHELRRE  840
LGRLFGLEGQ LENPLRSGWQ LVFVDREDDV LLVGDDPWQE FVNSVSCIKI LSPQEVQQMG  900
KPFELLSSAP GKRLGSSCDD YVSRQESRSL STGIASVGSV EF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1535938851388Auxin response factor 5
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218KKPITLVARVIAKQQRK
21828KKQKQKQKRKR
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G20540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1032800.0AK103280.1 Oryza sativa Japonica Group cDNA clone:J033124L19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656378.10.0PREDICTED: auxin response factor 17
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLA0A0D9WT900.0A0A0D9WT90_9ORYZ; Auxin response factor
STRINGLPERR06G20540.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]