PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G20540.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ARF
Protein Properties Length: 910aa    MW: 100970 Da    PI: 6.1196
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G20540.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.72.5e-24134235199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  LPERR06G20540.2 134 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 223
                      99*****************************86555544..8************************************************..77 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  LPERR06G20540.2 224 DNNQLLLGIRRA 235
                      77778***9997 PP
2Auxin_resp88.71.1e-292683351783
       Auxin_resp  17 PrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       ras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdld  rWpnS+Wrs+k
  LPERR06G20540.2 268 SRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDAARWPNSHWRSVK 335
                      599****************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-48119263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.6E-43126249IPR015300DNA-binding pseudobarrel domain
CDDcd100171.80E-22133234No hitNo description
PROSITE profilePS5086313.239134236IPR003340B3 DNA binding domain
PfamPF023628.3E-23134235IPR003340B3 DNA binding domain
SMARTSM010191.8E-25134236IPR003340B3 DNA binding domain
PfamPF065073.9E-25267335IPR010525Auxin response factor
PfamPF023092.4E-8776864IPR033389AUX/IAA domain
SuperFamilySSF542772.22E-7776855No hitNo description
PROSITE profilePS5174523.1779863IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 910 aa     Download sequence    Send to blast
MRLSSSSGSV LPTQASSPEA VEEQKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHSEQV  60
AASTNKEMES QIPNYPNLPP QLICQLHNVT MHADAETDEV YAQMTLQPLS PQELKDPYLP  120
AELGTANKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP AQELIAKDLH  180
GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRANRPQT  240
VMPSSVLSSD SMHIGLLAAA AHAASTNSRA SPSEFVIPLA KYVKAVYHTR ISVGMRFRML  300
FETEESSVRR YMGTITGISD LDAARWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT  360
FPMYPSPFPL RLKRPWPTGL PSLHGGKEDD LTSSLMWLRE SANPGFQSLN FGGLGMSPWM  420
QPRLDTSLLG LQPDMYQTMA AAAFQDPTKQ VSPTMLQFQQ PQNIGGRANP LLASQILQQV  480
QPQFQQHQYL QNINETTIQG QTQTEFLQQQ LQRCQSFTEQ KPQLQTQQQQ QESQQQQQQQ  540
SQCMQVQQHQ QMQQQKNMTN YQSVSNALSP FSQLSSASQS SPMTLQTILP FSQPQSFPDT  600
NMSSLSPSNT STIHNNTLRP FSSEAPSHLS MPRPTAIPVA DPWSSKRVAV ESLLPSRPQV  660
TSQIEQLDST PPGIPQSSAL APLPGRGCLV DQDGNSDPQN HLLFGVNIDS QSLLMQGGIP  720
NLQGENDSTA IPYSTSNFLS PSQNDFPLDQ TLNSADCLDE SGYVPCSQNS DQVINRPPAT  780
FVKVYKSGTY GRSLDITRFS SYHELRRELG RLFGLEGQLE NPLRSGWQLV FVDREDDVLL  840
VGDDPWQEFV NSVSCIKILS PQEVQQMGKP FELLSSAPGK RLGSSCDDYV SRQESRSLST  900
GIASVGSVEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1532735651388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G20540.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1032800.0AK103280.1 Oryza sativa Japonica Group cDNA clone:J033124L19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656378.10.0PREDICTED: auxin response factor 17
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLA0A0D9WT900.0A0A0D9WT90_9ORYZ; Auxin response factor
STRINGLPERR06G20540.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]