PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G20540.3
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ARF
Protein Properties Length: 916aa    MW: 101597 Da    PI: 6.1196
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G20540.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.72.6e-24140241199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  LPERR06G20540.3 140 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 229
                      99*****************************86555544..8************************************************..77 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  LPERR06G20540.3 230 DNNQLLLGIRRA 241
                      77778***9997 PP
2Auxin_resp88.71.1e-292743411783
       Auxin_resp  17 PrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       ras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdld  rWpnS+Wrs+k
  LPERR06G20540.3 274 SRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDAARWPNSHWRSVK 341
                      599****************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-48125269IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.7E-43132255IPR015300DNA-binding pseudobarrel domain
CDDcd100171.82E-22139240No hitNo description
PfamPF023628.3E-23140241IPR003340B3 DNA binding domain
PROSITE profilePS5086313.239140242IPR003340B3 DNA binding domain
SMARTSM010191.8E-25140242IPR003340B3 DNA binding domain
PfamPF065074.0E-25273341IPR010525Auxin response factor
SuperFamilySSF542772.22E-7782861No hitNo description
PfamPF023092.5E-8782870IPR033389AUX/IAA domain
PROSITE profilePS5174523.1785869IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 916 aa     Download sequence    Send to blast
MRLSSSSGSV LPTQASSPEA VEEQKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHSEQG  60
QLLSQVAAST NKEMESQIPN YPNLPPQLIC QLHNVTMHAD AETDEVYAQM TLQPLSPQEL  120
KDPYLPAELG TANKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD FTQQPPAQEL  180
IAKDLHGNEW KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDSVLFIWND NNQLLLGIRR  240
ANRPQTVMPS SVLSSDSMHI GLLAAAAHAA STNSRASPSE FVIPLAKYVK AVYHTRISVG  300
MRFRMLFETE ESSVRRYMGT ITGISDLDAA RWPNSHWRSV KVGWDESTAG ERQPRVSLWE  360
IEPLTTFPMY PSPFPLRLKR PWPTGLPSLH GGKEDDLTSS LMWLRESANP GFQSLNFGGL  420
GMSPWMQPRL DTSLLGLQPD MYQTMAAAAF QDPTKQVSPT MLQFQQPQNI GGRANPLLAS  480
QILQQVQPQF QQHQYLQNIN ETTIQGQTQT EFLQQQLQRC QSFTEQKPQL QTQQQQQESQ  540
QQQQQQSQCM QVQQHQQMQQ QKNMTNYQSV SNALSPFSQL SSASQSSPMT LQTILPFSQP  600
QSFPDTNMSS LSPSNTSTIH NNTLRPFSSE APSHLSMPRP TAIPVADPWS SKRVAVESLL  660
PSRPQVTSQI EQLDSTPPGI PQSSALAPLP GRGCLVDQDG NSDPQNHLLF GVNIDSQSLL  720
MQGGIPNLQG ENDSTAIPYS TSNFLSPSQN DFPLDQTLNS ADCLDESGYV PCSQNSDQVI  780
NRPPATFVKV YKSGTYGRSL DITRFSSYHE LRRELGRLFG LEGQLENPLR SGWQLVFVDR  840
EDDVLLVGDD PWQEFVNSVS CIKILSPQEV QQMGKPFELL SSAPGKRLGS SCDDYVSRQE  900
SRSLSTGIAS VGSVEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1502736251388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G20540.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1032800.0AK103280.1 Oryza sativa Japonica Group cDNA clone:J033124L19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656378.10.0PREDICTED: auxin response factor 17
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLA0A0D9WT920.0A0A0D9WT92_9ORYZ; Auxin response factor
STRINGLPERR06G20540.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]