PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G21240.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 188aa    MW: 19984.2 Da    PI: 7.3463
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G21240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-181463255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr ++ +gr++AeIrdp    k++ ++lg+f++ae Aa+a++aa+++l+g
  LPERR06G21240.1 14 RYRGVRKRP-SGRYAAEIRDPA---KKTPIWLGTFDSAEAAARAYDAAARSLRG 63
                     59*******.7*********83...36*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.6E-341477IPR001471AP2/ERF domain
PfamPF008471.8E-111463IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-211472IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-291472IPR001471AP2/ERF domain
CDDcd000186.71E-161470No hitNo description
PROSITE profilePS5103221.971471IPR001471AP2/ERF domain
PRINTSPR003678.0E-81526IPR001471AP2/ERF domain
PRINTSPR003678.0E-83753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MRKSKQPQPS PEIRYRGVRK RPSGRYAAEI RDPAKKTPIW LGTFDSAEAA ARAYDAAARS  60
LRGPTARTNF PSATPSPPPP RPPPAAATAA TSSHSSTVES WSGGAIRAAA STLARSAAPM  120
ETAEEEEEDC HSYCGSSSSV LCVDGSDDAA ASRAPRPFDL NMPPPPEEVD MATVADQMGI  180
RYDTLLRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1914711472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G21240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039350.0AP003935.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0661G04.
GenBankAP0054570.0AP005457.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0532H03.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641022.11e-83ethylene-responsive transcription factor 3
TrEMBLA0A0D9WTH31e-130A0A0D9WTH3_9ORYZ; Uncharacterized protein
STRINGLPERR06G21240.11e-131(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61022347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.12e-19ethylene responsive element binding factor 4