PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G21680.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 226aa    MW: 25319.9 Da    PI: 9.5587
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G21680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.31.1e-1789143256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ ++tkeq + Le+ F+ ++ +s++++ e+A++l+L+ rqV vWFqNrRa+ k
  LPERR06G21680.1  89 RKKLQLTKEQSTLLENSFRLHNILSHAQKHEIARQLKLKPRQVEVWFQNRRARTK 143
                      778899***********************************************98 PP
2HD-ZIP_I/II112.92.1e-3689177190
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                      +kk++l+keq++lLE+sF+ ++ L++ +K+e+ar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een++L++e  eL+ +
  LPERR06G21680.1  89 RKKLQLTKEQSTLLENSFRLHNILSHAQKHEIARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCKSLREENQQLKHELMELQ-R 177
                      69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-1767146IPR009057Homeodomain-like
SuperFamilySSF466893.26E-1877146IPR009057Homeodomain-like
PROSITE profilePS5007116.90885145IPR001356Homeobox domain
SMARTSM003896.7E-1387149IPR001356Homeobox domain
PfamPF000464.8E-1589143IPR001356Homeobox domain
CDDcd000865.57E-1489146No hitNo description
PROSITE patternPS000270120143IPR017970Homeobox, conserved site
PfamPF021831.2E-8145176IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.7E-15145188IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MYSPSRMEGE EDLGAWLGLA IGGGEALSPV KHVKEERRRC SDDHGVHDQQ SSGSNKMMKG  60
EKGARLRMMR NNNNGDGVLS LSCEGGGTRK KLQLTKEQST LLENSFRLHN ILSHAQKHEI  120
ARQLKLKPRQ VEVWFQNRRA RTKLKQTEVD CEFLKRCCKS LREENQQLKH ELMELQRLAA  180
AAQLYVPFPR SSAAAAMVNI CPSCDKITMI GSGEMAAKSS SSYSSE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137145RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G21680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643687.17e-83homeobox-leucine zipper protein HOX18
SwissprotQ5Z6F62e-83HOX18_ORYSJ; Homeobox-leucine zipper protein HOX18
TrEMBLA0A0D9WTN81e-167A0A0D9WTN8_9ORYZ; Uncharacterized protein
STRINGLPERR06G21680.11e-167(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81303448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-45HD-ZIP family protein