PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G22200.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family SBP
Protein Properties Length: 516aa    MW: 55578.4 Da    PI: 9.526
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G22200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.55.8e-41228304278
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      CqvegC++dls+a++yhr+hkvCe+hskap+v+vsgle+rfCqqCsrfh l efD++k+sCrrrL++hn+rrrk+q+
  LPERR06G22200.1 228 CQVEGCKVDLSTARDYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKSCRRRLSDHNARRRKPQQ 304
                      **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.7E-33220289IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.351225302IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.01E-38227307IPR004333Transcription factor, SBP-box
PfamPF031101.7E-31228301IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MINQEHQGGR KAGATSLVLL VVGGTLGRKE VTIGVAEKQH NGIAPCKPVM SSFGMNWNQK  60
SPMWEWDNSI ASFGLSKMEN PKNIPHPEPR GIVVGAANHG STNSSGGTFT SSSELANGSS  120
KSSLSASFDS SSKLGNSLEF RFTSVKGHDK NMCKDVEAGR VEDSGTSPAV AVSHGEPAIG  180
LKLGKRTYFE NGCGGQNVKS STASGVTNPS TVVKKTKVSQ QNTQNSYCQV EGCKVDLSTA  240
RDYHRKHKVC EAHSKAPKVI VSGLERRFCQ QCSRFHGLAE FDQKKKSCRR RLSDHNARRR  300
KPQQATISFG SSRIATMFYD ARQQADIYFG QSPFGQVRSN AISSRDHLGG FKFTETKLPW  360
MKPMQVVGLE DPHFSTLQMP TNVVEHTVHP HDVDGLIPFK GNTTKVLNQG VEESTVVSNS  420
NVAPDLRHAL SLLSSDSWGL ADIQTSSQVH SGGVMPPLAA TGVAAPTNPI NLMHLHPSPG  480
GFWQGGDDPP PIDHAMQVQA FMHLGSGSTS GYGHLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-292283011184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283300KKKSCRRRLSDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G22200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0616410.0AK061641.1 Oryza sativa Japonica Group cDNA clone:001-036-B03, full insert sequence.
GenBankAK0731790.0AK073179.1 Oryza sativa Japonica Group cDNA clone:J033004F21, full insert sequence.
GenBankAK1021360.0AK102136.1 Oryza sativa Japonica Group cDNA clone:J033085H14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656454.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015694397.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015694398.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015694399.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015694400.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015694401.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015694402.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015694403.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015694404.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015694405.10.0PREDICTED: squamosa promoter-binding-like protein 12
SwissprotA2YGR50.0SPL12_ORYSI; Squamosa promoter-binding-like protein 12
TrEMBLA0A0D9WTV20.0A0A0D9WTV2_9ORYZ; Uncharacterized protein
STRINGLPERR06G22200.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.36e-51squamosa promoter binding protein-like 2