PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G22200.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family SBP
Protein Properties Length: 491aa    MW: 52992.4 Da    PI: 9.3901
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G22200.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.65.4e-41203279278
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      CqvegC++dls+a++yhr+hkvCe+hskap+v+vsgle+rfCqqCsrfh l efD++k+sCrrrL++hn+rrrk+q+
  LPERR06G22200.2 203 CQVEGCKVDLSTARDYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFDQKKKSCRRRLSDHNARRRKPQQ 279
                      **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.5E-33195264IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.351200277IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.75E-38202282IPR004333Transcription factor, SBP-box
PfamPF031101.6E-31203276IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MINQEHQGGR KAGATSLVLL VVGVMSSFGM NWNQKSPMWE WDNSIASFGL SKMENPKNIP  60
HPEPRGIVVG AANHGSTNSS GGTFTSSSEL ANGSSKSSLS ASFDSSSKLG NSLEFRFTSV  120
KGHDKNMCKD VEAGRVEDSG TSPAVAVSHG EPAIGLKLGK RTYFENGCGG QNVKSSTASG  180
VTNPSTVVKK TKVSQQNTQN SYCQVEGCKV DLSTARDYHR KHKVCEAHSK APKVIVSGLE  240
RRFCQQCSRF HGLAEFDQKK KSCRRRLSDH NARRRKPQQA TISFGSSRIA TMFYDARQQA  300
DIYFGQSPFG QVRSNAISSR DHLGGFKFTE TKLPWMKPMQ VVGLEDPHFS TLQMPTNVVE  360
HTVHPHDVDG LIPFKGNTTK VLNQGVEEST VVSNSNVAPD LRHALSLLSS DSWGLADIQT  420
SSQVHSGGVM PPLAATGVAA PTNPINLMHL HPSPGGFWQG GDDPPPIDHA MQVQAFMHLG  480
SGSTSGYGHL H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-292032761184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258275KKKSCRRRLSDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G22200.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0616410.0AK061641.1 Oryza sativa Japonica Group cDNA clone:001-036-B03, full insert sequence.
GenBankAK0731790.0AK073179.1 Oryza sativa Japonica Group cDNA clone:J033004F21, full insert sequence.
GenBankAK1021360.0AK102136.1 Oryza sativa Japonica Group cDNA clone:J033085H14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656454.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015694397.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015694398.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015694399.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015694400.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015694401.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015694402.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015694403.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015694404.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_015694405.10.0PREDICTED: squamosa promoter-binding-like protein 12
SwissprotA2YGR50.0SPL12_ORYSI; Squamosa promoter-binding-like protein 12
TrEMBLA0A0D9WTV30.0A0A0D9WTV3_9ORYZ; Uncharacterized protein
STRINGLPERR06G22200.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.33e-51squamosa promoter binding protein-like 2