PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G22770.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family SRS
Protein Properties Length: 248aa    MW: 26348.2 Da    PI: 7.5046
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G22770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702213.93.8e-66261844154
           DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrel...kskkqsalss 88 
                       + sCqdCGn+akkdC+h RCRtCC+srgf+CathvkstWvpaakrrerqqqlaa+ + aa+++      a+aa+kr+rel     + + + s+
  LPERR06G22770.1  26 SSLSCQDCGNNAKKDCSHLRCRTCCRSRGFNCATHVKSTWVPAAKRRERQQQLAALFRGAATNNssaaaaAAAAAKRPRELvrsLGRLNPS-SH 118
                      5679***************************************************999998888788877778889999885532223333.33 PP

           DUF702  89 tklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                      + +  +++++     ++P+e+s+eavfrcvr+++vd+ e+e+aYqtavsigGh+fkGiL+d+G+++
  LPERR06G22770.1 119 SAMIATTTSSGEGDGRFPPELSVEAVFRCVRIGAVDEPEAEFAYQTAVSIGGHTFKGILRDHGPAD 184
                      3334444445566677***********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051427.5E-6327183IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.1E-252971IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.7E-20134182IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MQGHIRSSRE GGEEEEINIQ KEVENSSLSC QDCGNNAKKD CSHLRCRTCC RSRGFNCATH  60
VKSTWVPAAK RRERQQQLAA LFRGAATNNS SAAAAAAAAA KRPRELVRSL GRLNPSSHSA  120
MIATTTSSGE GDGRFPPELS VEAVFRCVRI GAVDEPEAEF AYQTAVSIGG HTFKGILRDH  180
GPADHELPPS SAEYHQLTGG QGREESSPAG SSEAAAAVTS AAVLMDPYPT PIGAFAAGTQ  240
FFPHNPRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G22770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043291e-81AP004329.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1663_H12.
GenBankAP0054631e-81AP005463.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0712G01.
GenBankAP0149621e-81AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642175.11e-124protein SHI RELATED SEQUENCE 1
RefseqXP_025881792.11e-124protein SHI RELATED SEQUENCE 1
TrEMBLA0A0D9WU290.0A0A0D9WU29_9ORYZ; Uncharacterized protein
STRINGLPERR06G22770.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.11e-56Lateral root primordium (LRP) protein-related