PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR06G23280.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bHLH

Protein Properties

Length: 324aa MW: 35069.9 Da PI: 4.5556

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR06G23280.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.4	1.9e-11	162	204	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L LPERR06G23280.1 162 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 204 79*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.80E-5	148	209	No hit	No description
PROSITE profile	PS50888	15.269	155	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.3E-16	159	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-12	161	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-15	162	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.7E-9	162	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	4.84E-4	255	283	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MELDEQAFLE ELFSLRRDAW EYNAMGDFFS PACAAAAAAA AMDGSFQERH QPTTVSVLPT 60 FTASYDQAPP PAAATGFDCL SEVYGNAAAA FVPNAGAGGD YGGDMGFLDV VEPKANMVVD 120 GGIGVCKVEP GLADGGGGGF VPAAAPASKK KRVEGMPSKN LMAERRRRKR LNDRLSMLRS 180 VVPKISKMDR TSILGDTIDY MKELLERIRQ LQEEIEEQQQ ETPGVLSVFR ELNPNEMLAR 240 NTPKFDVERK EGGDTRVEIY CAAKPGLLLS TVSTLETLGL DIQQCVVSCF NDFGMHASCS 300 EVASSFSFIM LLFFMSKPNN LGAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	149	169	KKRVEGMPSKNLMAERRRRKR
2	163	170	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR06G23280.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015693904.1	1e-157	PREDICTED: transcription factor bHLH93-like
Swissprot	Q9LSL1	3e-61	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A0D9WU93	0.0	A0A0D9WU93_9ORYZ; Uncharacterized protein
STRING	LPERR06G23280.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1302	37	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	9e-41	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]