PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G23490.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 206aa    MW: 22284.9 Da    PI: 7.6492
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G23490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000166786221
                     EETTTTEEESSHHHHHHHHH CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                     +Cp Cg+ Fs+    + H+r
  LPERR06G23490.1 67 PCPVCGRKFSTEKAVHGHMR 86
                     6******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.46E-664138No hitNo description
PROSITE profilePS5015710.3676693IPR007087Zinc finger, C2H2
SMARTSM003550.00796688IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.2E-46790IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.3E-56889IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
PfamPF139126.9E-7115140IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.094116143IPR007087Zinc finger, C2H2
SMARTSM003553.6116138IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MVASTAHVFV QAAHQLAGAG GGDEPPRHPW HRHLKSAHET DAVASWRERL AAALADAAGE  60
DLDKWIPCPV CGRKFSTEKA VHGHMRCHPG RSYRGMAPPR QPSAGDLGAD GKYYRYVCDR  120
CRAPFATRQA LGGHRASHSG KKGCFWYAKQ EEEAARPAPV VVRDFDLNEL APEAIQAAQE  180
EAQAEAAAVA ANAAADHHVQ EKAKEN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G23490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642837.12e-57zinc finger protein ZAT2
TrEMBLA0A0D9WUB71e-148A0A0D9WUB7_9ORYZ; Uncharacterized protein
STRINGLPERR06G23490.11e-148(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130102729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.13e-16C2H2-like zinc finger protein