PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G01870.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TALE
Protein Properties Length: 407aa    MW: 44639.3 Da    PI: 7.2378
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G01870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox309.1e-103333682055
                      HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  LPERR07G01870.1 333 YKWPYPSETEKIALAESTGLDQKQINNWFINQRKRH 368
                      4679*****************************885 PP
2ELK35.52.2e-12288309122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK qLl+KYsgyL+sL+qEFs
  LPERR07G01870.1 288 ELKFQLLKKYSGYLSSLRQEFS 309
                      9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.4E-2194138IPR005540KNOX1
PfamPF037903.5E-2195136IPR005540KNOX1
SMARTSM012567.0E-25141239IPR005541KNOX2
PfamPF037912.4E-15203237IPR005541KNOX2
PfamPF037892.6E-9288309IPR005539ELK domain
PROSITE profilePS5121311.401288308IPR005539ELK domain
SMARTSM011885.7E-7288309IPR005539ELK domain
PROSITE profilePS5007112.892308371IPR001356Homeobox domain
SuperFamilySSF466891.58E-19309382IPR009057Homeodomain-like
SMARTSM003894.4E-13310375IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.7E-28313372IPR009057Homeodomain-like
CDDcd000861.78E-12320372No hitNo description
PfamPF059201.2E-16328367IPR008422Homeobox KN domain
PROSITE patternPS000270346369IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MDHHNHHHHH QSFGNLGVGG SSGGGGKAAA ASSFLQLPLS TAAAASSMGG ATAYYGTPLA  60
LHHAAHAAAG PSQYGHGSHK HGGAGGEISP AEAEAIKSKI MAHPQYSALL AAYLDCQKVG  120
APPEVMERLT ATAAKLDTRP PGRHDARDPE LDQFMVRSQL RPATKLVYST GRLIDSLIDP  180
SAHDYIACLG LINRIESNQI TQEAYCNMLS KYREELTRPI DEAMEFLKRV ESQLDSLAGA  240
GHVGGGGSAR LLLTDGKSEC VGSSEDDMDP SGRENEPPEI DPRAEDKELK FQLLKKYSGY  300
LSSLRQEFSK KKKKGKLPKE ARQKLLHWWE LHYKWPYPSE TEKIALAEST GLDQKQINNW  360
FINQRKRHWK PSEDMPFVMM EGFHPQNAAA LYMDGPFMAD GMYRLGS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G01870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0160710.0AB016071.1 Oryza sativa Japonica Group mRNA, complete cds.
GenBankAK1118770.0AK111877.1 Oryza sativa Japonica Group cDNA clone:J033044D23, full insert sequence.
GenBankFJ9402080.0FJ940208.1 Oryza sativa Japonica Group clone KCB937E04 homeobox protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955415.11e-179homeobox protein rough sheath 1
SwissprotO650341e-178KNOSC_ORYSI; Homeobox protein knotted-1-like 12
SwissprotO804161e-178KNOSC_ORYSJ; Homeobox protein knotted-1-like 12
TrEMBLA0A0D9WV640.0A0A0D9WV64_9ORYZ; Uncharacterized protein
STRINGLPERR07G01870.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-98KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Sato Y, et al.
    Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
    EMBO J., 1999. 18(4): p. 992-1002
    [PMID:10022841]
  2. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  3. Nagasaki H,Sakamoto T,Sato Y,Matsuoka M
    Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
    Plant Cell, 2001. 13(9): p. 2085-98
    [PMID:11549765]
  4. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  5. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  6. Yin H, et al.
    SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
    Planta, 2013. 237(1): p. 15-27
    [PMID:22956125]