PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G03140.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NF-YA
Protein Properties Length: 314aa    MW: 33944.9 Da    PI: 8.5083
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G03140.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA92.64.7e-29168222358
        CBFB_NFYA   3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      p+YVNaKQ+++Il+RR +Rak+++++++ ++srkpylheSRh+hA+rR+RgsgGrF
  LPERR07G03140.2 168 PVYVNAKQFNGILRRRLARAKADRDHRV-SRSRKPYLHESRHRHAMRRARGSGGRF 222
                      9***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.6E-32164225IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.236165225IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.6E-22168190IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.1E-29168222IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.6E-22199222IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MPWWAGAGSQ PLLGAAGEES FCQLSNAIMN DSRVLQDHHH HNHNQILAAG RQMQHHFPAM  60
PPERRHNNPH HPHPPPAAEN SVMKFPIISG DSDLGKDLKF HDSSVPTIAA YSPLQEYQGH  120
FELALAQSMV CTNFCNSDQS YGVYSPYGAQ TMAGRMLLPP AIATDVGPVY VNAKQFNGIL  180
RRRLARAKAD RDHRVSRSRK PYLHESRHRH AMRRARGSGG RFLNTKNVSA SAADDAGEQG  240
ASNKSSSESE AARVYPDEDD MGGIGGGDFH HAMGHLRSPA FFPSLAAMMD GGGGAGGGEG  300
KWAAAATAHH VLKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-17168237473NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
4g91_A3e-17168224461HAPB protein
4g92_A3e-17168224461HAPB protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206215RHRHAMRRAR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G03140.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645550.11e-132nuclear transcription factor Y subunit A-2
TrEMBLA0A0D9WVN40.0A0A0D9WVN4_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9WVN50.0A0A0D9WVN5_9ORYZ; Uncharacterized protein
STRINGLPERR07G03140.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.38e-27nuclear factor Y, subunit A10