PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G04190.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 493aa    MW: 53582 Da    PI: 6.278
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G04190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS357.52e-109724473373
             GRAS   3 elLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      + L++cA a+++gd ++a   L+  +e+    p    ++R+a+ f+ AL++rl+   ++ +  lp  + +    +e+ + ++ f+e+ P lkf+
  LPERR07G04190.1  72 NHLVTCAGAIQAGDYAAAAGSLSDAREIltKIPVSVGIRRVATLFADALSERLFPAFPNSVLPLPLPTPR----AEQRKLFRGFYEAGPHLKFG 161
                      689************************976778889*******************777777666655554....667788999*********** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                      h+taNqaIlea+eg+ +vH+iDf ++ G+QWpaL+qaLa Rp+gpp lR+Tg+g+   ++++el+ +g +La+fA++++vpf f+ ++a+++++
  LPERR07G04190.1 162 HFTANQAILEAFEGCGAVHVIDFAVMDGVQWPALIQALAIRPGGPPFLRLTGIGPLVDSDRDELRDVGIQLAEFARSCNVPFTFRGIAANQIDC 255
                      *******************************************************9999*********************************** PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrll.desvsles....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                      l+++++r+ pgE++aVn +l+lhrll d+++++      ++++vL+l+ sl Pkv++vveqea+hn++s+ er++++l yy+a+fds+e++  r
  LPERR07G04190.1 256 LRPWMFRIVPGETIAVNAMLHLHRLLvDQDATMVAsspaPIEAVLHLIASLDPKVFTVVEQEANHNKSSLQERITNSLFYYAAMFDSVEVSN-R 348
                      ************************9842333333234568999*********************************************9995.4 PP

             GRAS 278 es...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                      ++    + + + +++l+rei ++v++eg +r+erhe +++W e +++aG++ +p ++k+  qa + +r+ ++ g+ v+e++g l+l+W++++L+
  LPERR07G04190.1 349 DTggdGAGNPLAEAFLQREIADIVCHEGISRVERHEPMARWMESMQRAGLTLIPHGQKELYQAAMHVRELSGAGFGVQENDGFLTLTWRNQKLY 442
                      444778888999999******************************************************************************* PP

             GRAS 369 svSaW 373
                      ++SaW
  LPERR07G04190.1 443 TASAW 447
                      ***** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.61144428IPR005202Transcription factor GRAS
PfamPF035146.8E-10772447IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MAHFGDFGDW SPMDVATAAL AMASSRNGSG AAAYVPLPPG MTVATPGDPS TVQIEAARQW  60
REMENTTVRF LNHLVTCAGA IQAGDYAAAA GSLSDAREIL TKIPVSVGIR RVATLFADAL  120
SERLFPAFPN SVLPLPLPTP RAEQRKLFRG FYEAGPHLKF GHFTANQAIL EAFEGCGAVH  180
VIDFAVMDGV QWPALIQALA IRPGGPPFLR LTGIGPLVDS DRDELRDVGI QLAEFARSCN  240
VPFTFRGIAA NQIDCLRPWM FRIVPGETIA VNAMLHLHRL LVDQDATMVA SSPAPIEAVL  300
HLIASLDPKV FTVVEQEANH NKSSLQERIT NSLFYYAAMF DSVEVSNRDT GGDGAGNPLA  360
EAFLQREIAD IVCHEGISRV ERHEPMARWM ESMQRAGLTL IPHGQKELYQ AAMHVRELSG  420
AGFGVQENDG FLTLTWRNQK LYTASAWHRA VTGPRVVNGG ATAMDPEEWK NGGKDGNNGG  480
SFCWKRVVKT RGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-477744726378Protein SCARECROW
5b3h_A2e-478744728377Protein SCARECROW
5b3h_D2e-478744728377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G04190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638486.10.0DELLA protein SLR1
TrEMBLA0A0D9WW260.0A0A0D9WW26_9ORYZ; Uncharacterized protein
STRINGLPERR07G04190.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.15e-82RGA-like 2