PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G04600.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 294aa    MW: 30685.6 Da    PI: 6.6826
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G04600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-08144188554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h+++Er RR+ri +++  L++l+P+       K + a++L +  +Y+k L
  LPERR07G04600.1 144 HSIAERLRRERIAERMRALQDLVPNT-----NKTDRAAMLDEILDYVKFL 188
                      99***********************7.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.34E-10137193No hitNo description
SuperFamilySSF474594.97E-15137198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.796139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-14141199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-6144188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-10145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MAGQHPPTGG GAEDDFFDHF FSIPSAAAAG GGGSGGLGLG SGDHHPFPLA LSLDAAAAAE  60
GAAGGGHDGG RTDRDPVQLA GLFAPVFGGA GGGVQPPHLR APPPPQVFHA QPKPGEGAMA  120
APQPQPPAPR PKVRARRGQA TDPHSIAERL RRERIAERMR ALQDLVPNTN KTDRAAMLDE  180
ILDYVKFLRL QVKVLSMSRL GGAGAVAQLV ADIPISVKGE ASDSGSKQQI WEKWSTDGTE  240
KQVAKLMEDD IGAAMQFLQS KALCMMPISL AMAIYDTQHS QDGHSVKPEP NTPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148153RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G04600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0960750.0FP096075.1 Phyllostachys edulis cDNA clone: bphyem116n19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644607.11e-163transcription factor UNE12
SwissprotO227681e-75UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0D9WW840.0A0A0D9WW84_9ORYZ; Uncharacterized protein
STRINGLPERR07G04600.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]