PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G05350.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 261aa    MW: 28009.9 Da    PI: 7.1378
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G05350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.6e-11141188455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+sLq
  LPERR07G05350.1 141 SHSLAERARREKISERMTILQDLVPGC----NKVIGKASVLDEIINYIQSLQ 188
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-18135204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.92E-11135192No hitNo description
PROSITE profilePS5088816.152137187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-18137205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-9141188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-11143193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDPAPSLAAE LWRLHHHHLP AAAAAPLESA SVVTDQGNGS RGGGGGSSGR RRPRREAGAE  60
DDSSKIVSTS AGGGGGQGSV APEAKRLKPM KSSDNNDSLR TEAETESGNS SKAADKNSAP  120
PDPPKQDYIH VRARRGQATD SHSLAERARR EKISERMTIL QDLVPGCNKV IGKASVLDEI  180
INYIQSLQHQ VEFLSMKLEA VDSHMNNGIA VFPVKDFGGQ PYHTAAGLTF DPQTPREYSH  240
TQGSTTEWLH MQIGNAYERV T
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G05350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2426450.0AK242645.1 Oryza sativa Japonica Group cDNA, clone: J090025G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645823.11e-132transcription factor BHLH094-like
SwissprotQ69WS31e-133BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A0D9WWH70.0A0A0D9WWH7_9ORYZ; Uncharacterized protein
STRINGLPERR07G05350.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.13e-67BIG PETAL P