PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G06530.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 229aa    MW: 24992.1 Da    PI: 11.3646
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G06530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2254.6e-0877102227
              AP2   2 gykGVrwdkkrgrWvAeIrdpseng.k 27 
                      +++GVr ++ +g+W+AeIrdps +g +
  LPERR07G06530.1  77 RFTGVRLRP-WGKWAAEIRDPSGGGrR 102
                      689******.**********9886642 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.5E-77799IPR001471AP2/ERF domain
PROSITE profilePS510329.78377114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGGGGGRRRR KPAAAAMDGE EVRRRVVRII FRDEDATDSS SSEEEGEGEA APAARVRRVM  60
EVKRSRVVRC HEVEERRFTG VRLRPWGKWA AEIRDPSGGG RREKEERKPV VMFPPPLALP  120
PRKKPMLLYP PPLPPKKKPL PPLPPSPPPP EKEKENTPLP LLLLPPKKKP LPPMPPSSPT  180
AAASASAPFV PRPVWSLLAG GKRKKQSGCG GRIPALNTAT AAVEETGRA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G06530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0055163e-39AP005516.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0066H10.
GenBankAP0057643e-39AP005764.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0016A21.
GenBankAP0149633e-39AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126153e-39CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
GenBankCT8361023e-39CT836102.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI017G24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9WWX41e-154A0A0D9WWX4_9ORYZ; Uncharacterized protein
STRINGLPERR07G06530.11e-155(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115732835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.11e-06ERF family protein