PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G07940.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HB-other
Protein Properties Length: 232aa    MW: 26394.8 Da    PI: 6.801
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G07940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81e-1958108656
                      S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      ++++ q++eLe++Fe+n+y+ +++r+eLAkklg++e+qVk+WFqN+R+++k
  LPERR07G07940.1  58 RHNDVQIKELESVFERNNYVGRKQRKELAKKLGMEEKQVKFWFQNQRTRKK 108
                      57889********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.13E-1844108IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-2047109IPR009057Homeodomain-like
PROSITE profilePS5007116.76350110IPR001356Homeobox domain
SMARTSM003893.3E-1652114IPR001356Homeobox domain
CDDcd000868.95E-1754108No hitNo description
PfamPF000464.5E-1758108IPR001356Homeobox domain
PRINTSPR000315.5E-68190IPR000047Helix-turn-helix motif
PROSITE patternPS00027085108IPR017970Homeobox, conserved site
PRINTSPR000315.5E-690106IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MDNKFQQHSD DAHVLDLPIT SMLEVDDGME ETNDSAGDDP DYGGEGKDEA TSFKRMKRHN  60
DVQIKELESV FERNNYVGRK QRKELAKKLG MEEKQVKFWF QNQRTRKKMH DERHETMVLQ  120
EENKALAAKN KVLKEAISDQ ICLTCNRPVV LPAAKTIQMW YLRFENMRLH GELQRATVVL  180
NQLTQDANAG AVALTQFGSS AKNSQTRLVI DSPTPLKLEN VPSPNSANAI NP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G07940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9WXE41e-174A0A0D9WXE4_9ORYZ; Uncharacterized protein
STRINGLPERR07G07940.11e-174(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149301619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52170.19e-23homeodomain GLABROUS 7