PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G08540.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 116aa    MW: 13470 Da    PI: 7.5063
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G08540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.11.5e-221172260
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhek 60
                     dDg+nWrK  qK++ gs++ rsY+rC++    gC+++k ve +++d ++  +tY +eH h+k
  LPERR07G08540.1 11 DDGWNWRKSSQKDILGSKYQRSYFRCSQMhseGCKARKIVESNNDDLNIWLVTYINEHSHQK 72
                     8**************************877889***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081120.897573IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-22672IPR003657WRKY domain
SuperFamilySSF1182904.71E-21771IPR003657WRKY domain
SMARTSM007741.6E-251072IPR003657WRKY domain
PfamPF031065.7E-201171IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MQSLLVKTMI DDGWNWRKSS QKDILGSKYQ RSYFRCSQMH SEGCKARKIV ESNNDDLNIW  60
LVTYINEHSH QKGAGPCDEQ SPSDLHVQLA TTRKRKEFDA SNDEITSKKQ FSEEQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-1710721478Disease resistance protein RRS1
5w3x_D3e-1710721478Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G08540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2890241e-104AK289024.1 Oryza sativa Japonica Group cDNA, clone: J090090I16, full insert sequence.
GenBankAK3185811e-104AK318581.1 Oryza sativa Japonica Group cDNA, clone: J090090I16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644838.13e-54uncharacterized protein LOC4342906 isoform X2
TrEMBLA0A0D9WXL54e-82A0A0D9WXL5_9ORYZ; Uncharacterized protein
STRINGLPERR07G08540.16e-83(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45260.12e-17Disease resistance protein (TIR-NBS-LRR class)