PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G08870.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 458aa    MW: 49247.1 Da    PI: 4.9618
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G08870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS297.34e-91584151373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                      lv+ L++cA a+++gd ++a   L+  +e+    p    + R+a+ f+ AL++rl+   ++      p +   +  +e+   +++f+e+ P lk
  LPERR07G08870.1  58 LVNHLVTCAGAIQAGDYAAAAGSLSDAREIltKIPISVGIGRVATLFADALSERLFPAFPNS---PLPLP---MPRAEQRELFRVFFEAGPHLK 145
                      5789*************************9766677799*****************933322...22222...33567778899********** PP

             GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                      f+h+taNqaIl+a+eg+ +vH+iDf  + G+QWpaL+q La Rp+gpp lR+Tg+g+ + ++++el+ +g +L +fA++++vpf f+ ++++++
  LPERR07G08870.1 146 FAHFTANQAILKAFEGCGAVHVIDFTDMDGVQWPALIQDLAIRPGGPPFLRLTGIGPLADSDRDELRDVGIQLVEFARSCNVPFTFRGIATDQI 239
                      *********************************************************9999****************************99*** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres. 279
                      ++l+++++r+ pgE++aVn vlqlhrll    +++        +v   sP     +e ea+hn+ s+ er++++l yy+a+fds+ea+  ++  
  LPERR07G08870.1 240 DCLRPWMFRIVPGETIAVNAVLQLHRLL---IDQDA-------AVVASSPA---PIEAEANHNKLSLQERVTDSLFYYVAMFDSIEATNRHTGg 320
                      ***************************9...33333.......44445664...57*****************************888544446 PP

             GRAS 280 .eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                        + + + +++l+ ei ++v++eg +r+e he +++W e +++aG++ +p + k+ + + + +r++++ g+ v+e++g l+l+W++++L+++Sa
  LPERR07G08870.1 321 dGAGNPLAEAFLQMEIADIVCHEGISRVECHEPMARWMESMQRAGLTLIPHGRKELCLVAMHVREFSGAGFGVQENDGFLTLTWQNQKLYTASA 414
                      68889999999*********************************************************************************** PP

             GRAS 373 W 373
                      W
  LPERR07G08870.1 415 W 415
                      * PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.43632396IPR005202Transcription factor GRAS
PfamPF035141.4E-8858415IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MDVADAALAM AINGNGSGAA ECVQSPPGMT VATPSVPSAV QIEAARRWQE MENTAVRLVN  60
HLVTCAGAIQ AGDYAAAAGS LSDAREILTK IPISVGIGRV ATLFADALSE RLFPAFPNSP  120
LPLPMPRAEQ RELFRVFFEA GPHLKFAHFT ANQAILKAFE GCGAVHVIDF TDMDGVQWPA  180
LIQDLAIRPG GPPFLRLTGI GPLADSDRDE LRDVGIQLVE FARSCNVPFT FRGIATDQID  240
CLRPWMFRIV PGETIAVNAV LQLHRLLIDQ DAAVVASSPA PIEAEANHNK LSLQERVTDS  300
LFYYVAMFDS IEATNRHTGG DGAGNPLAEA FLQMEIADIV CHEGISRVEC HEPMARWMES  360
MQRAGLTLIP HGRKELCLVA MHVREFSGAG FGVQENDGFL TLTWQNQKLY TASAWHCAVT  420
GPRVVTGGAI AMDPEERKNN SKDGSSGGSG QGFFAGNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-387541529378Protein SCARECROW
5b3h_A2e-387541528377Protein SCARECROW
5b3h_D2e-387541528377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G08870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638486.10.0DELLA protein SLR1
TrEMBLA0A0D9WXP60.0A0A0D9WXP6_9ORYZ; Uncharacterized protein
STRINGLPERR07G08870.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.13e-73RGA-like 2