PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G09750.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 99aa    MW: 10375.3 Da    PI: 7.6735
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G09750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.4e-051638123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C++ F++   L  H++ H
  LPERR07G09750.1 16 YECTFCKRGFTNAQALGGHMNIH 38
                     99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.9E-71542No hitNo description
PfamPF139128.9E-61540IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.3E-51642IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00971638IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2611643IPR007087Zinc finger, C2H2
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MNGDGAAKRA PAAAYYECTF CKRGFTNAQA LGGHMNIHRK DRGGSGGKSQ GSGQQLEGGS  60
GGGQQHGRDV HLGLTLGRDE EDGRDGVDLE LRLGHAHYP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G09750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126153e-62CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646403.11e-34zinc finger protein STAMENLESS 1-like
TrEMBLA0A0D9WXZ82e-64A0A0D9WXZ8_9ORYZ; Uncharacterized protein
STRINGLPERR07G09750.13e-65(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63633244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.19e-15C2H2 family protein