PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR07G10060.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

MYB

Protein Properties

Length: 189aa MW: 21598.5 Da PI: 9.775

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR07G10060.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.9	5.6e-14	20	61	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT+eEd l ++ k+ G ++W+++ar m+ +R++ c++rw+ LPERR07G10060.1 20 AWTAEEDATLQRLAKENGFRHWSRVARSMP-RRSARACRDRWR 61 7***************************.*********8 PP
2	Myb_DNA-binding	22.1	3.6e-07	72	115	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++T+ +d+ l++++ +lG + Wk I r + gRt k rw+ ++ LPERR07G10060.1 72 PFTARDDDELLRLHYRLGDR-WKDIGRAVY-GRTSRVMKRRWRELR 115 79**************99.****9.*********9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.837	13	68	IPR017930	Myb domain
SMART	SM00717	2.0E-9	17	66	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.49E-22	18	111	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.3E-17	20	73	IPR009057	Homeodomain-like
CDD	cd00167	4.26E-12	20	61	No hit	No description
Pfam	PF13921	7.9E-13	21	80	No hit	No description
PROSITE profile	PS50090	7.131	65	115	IPR017877	Myb-like domain
SMART	SM00717	0.0019	69	117	IPR001005	SANT/Myb domain
CDD	cd00167	8.18E-4	72	114	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.2E-8	74	114	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MATQPAARTR CVVRIRVPPA WTAEEDATLQ RLAKENGFRH WSRVARSMPR RSARACRDRW 60 RHDLARDVYD RPFTARDDDE LLRLHYRLGD RWKDIGRAVY GRTSRVMKRR WRELRRSGFP 120 ASAAGCRVEQ HAVDMESDQE EKAESVTREL ERPVADVLAS SFASCSIASD CAMDPFAGSL 180 ALGFACMAV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3zqc_A	3e-15	22	111	6	95	MYB3
3zqc_D	3e-15	22	111	6	95	MYB3
3zqc_G	3e-15	22	111	6	95	MYB3
3zqc_J	3e-15	22	111	6	95	MYB3
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR07G10060.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015645964.1	2e-92	transcription factor MYB73
TrEMBL	A0A0D9WY47	1e-133	A0A0D9WY47_9ORYZ; Uncharacterized protein
STRING	LPERR07G10060.1	1e-134	(Leersia perrieri)
STRING	LPERR07G10290.1	1e-134	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12569	20	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	3e-17	myb domain protein 73