PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G10310.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HB-other
Protein Properties Length: 203aa    MW: 23294.3 Da    PI: 8.1097
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G10310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.7e-193080656
                     S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     +++  q+++Le++Fekn+y+ +++reeLAkklg++erq+k+WF NrR++ k
  LPERR07G10310.1 30 RHSYVQIKQLESVFEKNNYVGQKQREELAKKLGMEERQIKFWFRNRRTRNK 80
                     46778********************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.5E-201384IPR009057Homeodomain-like
SuperFamilySSF466891.71E-181884IPR009057Homeodomain-like
PROSITE profilePS5007117.0862282IPR001356Homeobox domain
SMARTSM003899.0E-152386IPR001356Homeobox domain
CDDcd000861.68E-152680No hitNo description
PfamPF000462.3E-163080IPR001356Homeobox domain
PRINTSPR000313.7E-65362IPR000047Helix-turn-helix motif
PROSITE patternPS0002705780IPR017970Homeobox, conserved site
PRINTSPR000313.7E-66278IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MEETGDAARD DSDYSGEGQD EAASYKRTKR HSYVQIKQLE SVFEKNNYVG QKQREELAKK  60
LGMEERQIKF WFRNRRTRNK EENKTLLAEN KELKEAICDQ ICLKCDSPIV CAAKTTQMQY  120
LRFQNMRLHC ELQRATAVLI QVTQDANACP PKVFPLTRDL AVAQISSPTI NNQNSPAINY  180
PTPLELENWI SPNSVNSISP SKH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16575RQIKFWFRNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G10310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9WY801e-151A0A0D9WY80_9ORYZ; Uncharacterized protein
STRINGLPERR07G10310.11e-151(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149301619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.17e-18HD-ZIP family protein