PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G12300.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 194aa    MW: 20828.7 Da    PI: 9.5298
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G12300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM41.54.3e-13141367127
              NAM   7 FhPtdeelvveyLkkkvegkklel..eevikevdiykvePwdLpk...kvka....eekewyfFskrdkkyatgkrknratksgy..Wkatgkd 89 
                      F Pt+ e++++ L++k++g  ++   ++ ++e+d++++ P +L +   +  a    ++k wyfF++r  +   g r +r+  +g+  W + g++
  LPERR07G12300.1  14 FLPTEGEILHCLLRPKIAGAYIDSrfTHLVHEADVFSLPPDQLAAmhaH--ApgarGDKAWYFFTTRIGS---GGRGRRVGGDGTkrWCSVGSK 102
                      99******************9555214459*************843331..25555788******99775...66777776666555******* PP

              NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                      ke+   +    g  + + + +++a+  +   W+m ey 
  LPERR07G12300.1 103 KELAG-G---GGYCRRFRYREKTANGVVAPGWMMLEYG 136
                      **998.3...47888999999999999999*******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.3418159IPR003441NAC domain
SuperFamilySSF1019411.57E-2213159IPR003441NAC domain
PfamPF023652.3E-814136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MDPAAAAEEF PIPFLPTEGE ILHCLLRPKI AGAYIDSRFT HLVHEADVFS LPPDQLAAMH  60
AHAPGARGDK AWYFFTTRIG SGGRGRRVGG DGTKRWCSVG SKKELAGGGG YCRRFRYREK  120
TANGVVAPGW MMLEYGVVSQ EHAVGDGVAD LVLCRFFRSP RAARSDSKSP SSSASASASV  180
GRKRKAEALL CSDG
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G12300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006658578.11e-56PREDICTED: NAC domain-containing protein 72-like
TrEMBLA0A0D9WYX91e-139A0A0D9WYX9_9ORYZ; Uncharacterized protein
STRINGLPERR07G12300.11e-140(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP153951017