PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G12350.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family CAMTA
Protein Properties Length: 859aa    MW: 95744.9 Da    PI: 8.4054
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G12350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-199.72.2e-3132106477
             CG-1   4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvgg 77 
                      e   rw +++ei+aiL+n++++++++++ ++p sg+++Ly+rk+vr+frkDG+swkkkkdg+tv+E+hekLK ++
  LPERR07G12350.1  32 EaAVRWFRPNEIYAILANHARFKIHAQPVDKPVSGTVVLYDRKVVRNFRKDGHSWKKKKDGRTVQEAHEKLKENA 106
                      4488********************************************************************765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143741.18726154IPR005559CG-1 DNA-binding domain
SMARTSM010769.4E-2629213IPR005559CG-1 DNA-binding domain
PfamPF038594.4E-2533105IPR005559CG-1 DNA-binding domain
SuperFamilySSF812963.97E-11323409IPR014756Immunoglobulin E-set
SuperFamilySSF484032.18E-13499609IPR020683Ankyrin repeat-containing domain
CDDcd002041.31E-11507603No hitNo description
Gene3DG3DSA:1.25.40.207.5E-14523609IPR020683Ankyrin repeat-containing domain
PfamPF127969.5E-7532607IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.902535615IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.781544576IPR002110Ankyrin repeat
SMARTSM002486.4E-6544573IPR002110Ankyrin repeat
SMARTSM00248580583612IPR002110Ankyrin repeat
SuperFamilySSF525405.31E-9660761IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.83710732IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.657711737IPR000048IQ motif, EF-hand binding site
PfamPF006120.0026713731IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0095733755IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.493734758IPR000048IQ motif, EF-hand binding site
PfamPF006120.0047735755IPR000048IQ motif, EF-hand binding site
SMARTSM000152.4816838IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.084818846IPR000048IQ motif, EF-hand binding site
PfamPF006120.04819838IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
MAGAGGWDAL IGSEIHGFLT YADLNYEKLV AEAAVRWFRP NEIYAILANH ARFKIHAQPV  60
DKPVSGTVVL YDRKVVRNFR KDGHSWKKKK DGRTVQEAHE KLKENAMAAP NSEPEAADLP  120
TVNLVHTSPL TSADSTSAHT EQSYSTAVPE EINSHGGISA SSETSNHDSS LEEFWANLLE  180
SSIKNDPKSG SFSSSQQINN GPKNSENIIF NTSMSSNAIP ALYMASETYP TNHGLNQVTA  240
DHFKALKNQG DQTHSLFTSN VDFQSDQFIS SLVKSSMDGK VSDPNDVPAR QNSLGLWKYL  300
DDDNPGLEDN PGSVTQTNKT LFKITEISPE CAYSTETTKV VVVGNFDEQY KHLTGSAMYV  360
VFGDQCMAAD IVQTGVYRFM VGPHTPGQVD FYLTIDGKTP ISEIRSFTYH VMHANSLGGR  420
FTPSEDEYKK SNLQMQMRLA RLLFATNKKK IAPKLLVEGS KVSNLISASP EKEWTNLWNI  480
LSNSEGSEGV TESLLELVLR NRLQEWLVEM VMEGHKSTGR DDLGQGAIHL CSFLGFSLDF  540
RDSSGWTALH WAAYHGRERM VAALLSAGAN PSLVTDPTPE FPAGLTAADL AARQGYDGLA  600
AYLAEKGLTA HFEAMSLSKD TTQSPSKMKL TKLQSEKFEN LSEQELCLKE SLAAYRNAAD  660
AACNIQAALR ERTLKLQTKA IQLANPEIEA SEIVAAMRIQ HAFRNYNRKK TMRAAARIQS  720
HFRTWKMRRN FINMRRQAIR IQAAYRGHQV RRQYRKVIWS VGIVEKAILR WRKKRKGLRG  780
IASGMPVVMT VDAEAELAST AEEDFFQAGR QQAEDRFNRS VVRVQALFRS YKAQQEYRRM  840
KIAHEEAKLE FSEGQLGAA
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G12350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0654800.0AK065480.1 Oryza sativa Japonica Group cDNA clone:J013025F20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646432.10.0calmodulin-binding transcription activator CBT-like isoform X2
SwissprotQ7XHR20.0CBT_ORYSJ; Calmodulin-binding transcription activator CBT
TrEMBLA0A0D9WYY60.0A0A0D9WYY6_9ORYZ; Uncharacterized protein
STRINGLPERR07G12350.20.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators