PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G12470.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 186aa    MW: 20032.9 Da    PI: 9.7236
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G12470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM42.61.9e-13141367127
              NAM   7 FhPtdeelvveyLkkkvegkklel..eevikevdiykvePwdLpk...kvka....eekewyfFskrdkkyatgkrknratksgy..Wkatgkd 89 
                      F Ptd e++++ L++k++g  ++   ++ ++++d++++ P +L +   +  a    ++k wyfFs+r  +   g r +r+  +g   W   g++
  LPERR07G12470.1  14 FLPTDGEILHCLLRPKIAGAYIDSrfTHLVHDADVFSLPPDQLAAmhaH--ApgarGDKAWYFFSTRVGS---GGRGRRVGGDGSkrWCPVGSK 102
                      99******************9555214459*************843331..25555788******99765...66777776655444******* PP

              NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                      ke+   +    g  + + + +++a   +   W+m ey 
  LPERR07G12470.1 103 KELAG-G---GGYCQRFRYREKTATGVVAPGWMMVEYG 136
                      **998.3...48889999999999999999*******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.5398154IPR003441NAC domain
SuperFamilySSF1019412.48E-2413153IPR003441NAC domain
PfamPF023655.6E-914136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MDPAAAAKEF PIPFLPTDGE ILHCLLRPKI AGAYIDSRFT HLVHDADVFS LPPDQLAAMH  60
AHAPGARGDK AWYFFSTRVG SGGRGRRVGG DGSKRWCPVG SKKELAGGGG YCQRFRYREK  120
TATGVVAPGW MMVEYGVAQE HAVGDLVLCK IFRFPRSAHS DSKSPASASA SIGRKRKAET  180
LLCSDG
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G12470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006658578.12e-56PREDICTED: NAC domain-containing protein 72-like
TrEMBLA0A0D9WZ021e-133A0A0D9WZ02_9ORYZ; Uncharacterized protein
STRINGLPERR07G12470.11e-134(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP153951017