PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G12690.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 190aa    MW: 20345 Da    PI: 8.7478
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G12690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM39.71.5e-12101346127
              NAM   6 rFhPtdeelvveyLkkkvegkklel..eevikev.diykvePwdLpk...kvka....eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                       F Ptd e++++ L++k++g  ++   ++ ++++ d++ + P +L +   +  a    ++k wyfFs+r  +  +g+r      s +W + g++
  LPERR07G12690.1  10 PFLPTDGEILHCLLRPKIAGAFIDSrfTHLVHDIdDVFALPPDQLAAahsH--ApgarGDKAWYFFSTRIGSGGHGRRVGDD-GSKRWCSVGSK 100
                      599******************955421445999989*********843441..24455788*******99987776666553.5668******* PP

              NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                      ke+        g  + + + +++a+  +   W+m ey 
  LPERR07G12690.1 101 KELAG----GAGYCRRFRYREKTAKGVVAPGWMMLEYG 134
                      **988....46888999*999999999999*******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.2785158IPR003441NAC domain
SuperFamilySSF1019417.85E-239158IPR003441NAC domain
PfamPF023652.7E-910134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MASETEFSIP FLPTDGEILH CLLRPKIAGA FIDSRFTHLV HDIDDVFALP PDQLAAAHSH  60
APGARGDKAW YFFSTRIGSG GHGRRVGDDG SKRWCSVGSK KELAGGAGYC RRFRYREKTA  120
KGVVAPGWMM LEYGVVSQEH AGGADGISEL VLCKIFRSPR SDSGSPSSST SASASVGRKR  180
KAEALLCSDG
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G12690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006658578.16e-59PREDICTED: NAC domain-containing protein 72-like
TrEMBLA0A0D9WZ281e-135A0A0D9WZ28_9ORYZ; Uncharacterized protein
STRINGLPERR07G12690.11e-136(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP153951017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.24e-09NAC family protein