PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G12700.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 181aa    MW: 19496.2 Da    PI: 9.5076
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G12700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM41.44.4e-13101346127
              NAM   6 rFhPtdeelvveyLkkkvegkklel..eevikev.diykvePwdLpk.....kvka..eekewyfFskrdkkyatgkrknratksgy..Wkatg 87 
                       F Ptd e++++ L++k++g  ++   ++ ++++ d++++ P +L +        +  ++k wyfFs+r  +   g r +r+  +g   W   g
  LPERR07G12700.1  10 PFLPTDGEILHCLLRPKIAGAYIDSrfTHLVHDIhDVFSLPPDQLAAshahaP--GaqGDKAWYFFSTRIGS---GGRGRRVGGDGSkrWCPVG 98 
                      599******************95552144599999**********84344442..144788*******9775...66777766655444***** PP

              NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                      ++ke+   +    g  + L + +++a+      W+m ey 
  LPERR07G12700.1  99 SKKELAG-G---GGYCRRLRYREKTAKGVFAPGWMMLEYG 134
                      ****998.3...478889**998888887899*******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.8825152IPR003441NAC domain
PfamPF023657.9E-910134IPR003441NAC domain
SuperFamilySSF1019412.88E-2210152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MDPAEEFPVP FLPTDGEILH CLLRPKIAGA YIDSRFTHLV HDIHDVFSLP PDQLAASHAH  60
APGAQGDKAW YFFSTRIGSG GRGRRVGGDG SKRWCPVGSK KELAGGGGYC RRLRYREKTA  120
KGVFAPGWMM LEYGVAQEHA VADLVLCKIF QSPHSGSGSP SSSKSTSASA GRKRKADALL  180
C
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G12700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006658578.12e-57PREDICTED: NAC domain-containing protein 72-like
TrEMBLA0A0D9WZ291e-130A0A0D9WZ29_9ORYZ; Uncharacterized protein
STRINGLPERR07G12700.11e-131(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP153951017